SNP Profiles of PA 72 [PER]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
2. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
3. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
4. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
5. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
6. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
7. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
8. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
9. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
10. _GC-08-051-1-62
GGGGAAGGCCTTCCTTACGTCCAAGGAA
11. _GC-08-51-1-62
GGCCAAGGGGAACCAAACACGGTTGGAC
12. _8162_2
GG___AA_______________ACGTCC______AA
13. _8162_3
GG___AA_______________ACGTCC______AA
14. _8162_5
GG___AA_______________ACGTCC______AA
15. _8162_6
GG___AA_______________ACGTCC______AA
16. _8162_8
GG___AA_______________ACGTCC______AA
17. _8162_9
GG___AA_______________ACGTCC______AA
18. _8162_10
GG___AA_______________ACGTCC______AA
19. _8162_1_>_FP
GG___AA_______________ACGTCC______AA
20. _8162_4_>_FP
GG___AA_______________ACGTCC______AA
21. _8162_7_>_FP
GG___AA_______________ACGTCC______AA
22. _MARPER_D_633
GG___AA_______________ACGTCC______AC
23. _Marper_D_633
GG___AA_______________ACGTCC______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
2. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
3. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
4. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
5. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
6. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
7. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
8. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
9. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
10. _GC-08-051-1-62
CCAGGGCCAAGGGGAACTGGGGATCCAA
11. _GC-08-51-1-62
GGAGGGGGTTGGGGAAAGGGGGATGG___
12. _8162_2
CCAG___CC_________AA______GG______AA
13. _8162_3
CCAG___CC_________AA______GG______AA
14. _8162_5
CCAG___CC_________AA______GG______AA
15. _8162_6
CCAG___CC_________AA______GG______AA
16. _8162_8
CCAG___CC_________AA______GG______AA
17. _8162_9
CCAG___CC_________AA______GG______AA
18. _8162_10
CCAG___CC_________AA______GG______AA
19. _8162_1_>_FP
CCAG___CC_________AA______GG______AA
20. _8162_4_>_FP
CCAG___CC_________AA______GG______AA
21. _8162_7_>_FP
CCAG___CC_________AA______GG______AA
22. _MARPER_D_633
___AG___CC_________AA______GG______AA
23. _Marper_D_633
CCAG___CC_________AA______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
2. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
3. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
4. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
5. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
6. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
7. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
8. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
9. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
10. _GC-08-051-1-62
___CCACCTAAGTAGCGCCTTAATTAAAA
11. _GC-08-51-1-62
GGCCAC___AAACAGCGCCAA___AA___AA
12. _8162_2
______ACCT___GT___CGCC______TTAA___
13. _8162_3
______ACCT___GT___CGCC______TTAA___
14. _8162_5
______ACCT___GT___CGCC______TTAA___
15. _8162_6
______ACCT___GT___CGCC______TTAA___
16. _8162_8
______ACCT___GT___CGCC______TTAA___
17. _8162_9
______ACCT___GT___CGCC______TTAA___
18. _8162_10
______ACCT___GT___CGCC______TTAA___
19. _8162_1_>_FP
______ACCT___GT___CGCC______TTAA___
20. _8162_4_>_FP
______ACCT___GT___CGCC______TTAA___
21. _8162_7_>_FP
______ACCT___GT___CGCC______TTAA___
22. _MARPER_D_633
______ACCT___GT___CGCC______TTAA___
23. _Marper_D_633
______ACCT___GT___CGCC______TTAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
2. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
3. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
4. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
5. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
6. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
7. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
8. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
9. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
10. _GC-08-051-1-62
AACCCCGGAGGTGGTTAAGGAAGGCCCC
11. _GC-08-51-1-62
AA______CCAGACCCAAAACCAGCC___GG
12. _8162_2
_________GG_____________________GG___CC
13. _8162_3
_________GG_____________________GG___CC
14. _8162_5
_________GG_____________________GG___CC
15. _8162_6
_________GG_____________________GG___CC
16. _8162_8
_________GG_____________________GG___CC
17. _8162_9
_________GG_____________________GG___CC
18. _8162_10
_________GG_____________________GG___CC
19. _8162_1_>_FP
_________GG_____________________GG___CC
20. _8162_4_>_FP
_________GG_____________________GG___CC
21. _8162_7_>_FP
_________GG_____________________GG___CC
22. _MARPER_D_633
___________________________TT___GGCCCC
23. _Marper_D_633
_________GG_____________________GG___CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
2. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
3. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
4. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
5. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
6. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
7. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
8. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
9. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
10. _GC-08-051-1-62
CCGGCTGGCCAACTAGCCTTCCCCGGGG
11. _GC-08-51-1-62
GGGGAGGGGGAAAGAG___AA___GGGGCC
12. _8162_2
______CTGG___AACTAG_________CCGG___
13. _8162_3
______CTGG___AACTAG_________CCGG___
14. _8162_5
______CTGG___AACTAG_________CCGG___
15. _8162_6
______CTGG___AACTAG_________CCGG___
16. _8162_8
______CTGG___AACTAG_________CCGG___
17. _8162_9
______CTGG___AACTAG_________CCGG___
18. _8162_10
______CTGG___AACTAG_________CCGG___
19. _8162_1_>_FP
______CTGG___AACTAG_________CCGG___
20. _8162_4_>_FP
______CTGG___AACTAG_________CCGG___
21. _8162_7_>_FP
______CTGG___AACTAG_________CCGG___
22. _MARPER_D_633
______CTGG___AACTAG_________CCGG___
23. _Marper_D_633
______CTGG___AACTAG_________CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
2. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
3. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
4. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
5. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
6. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
7. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
8. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
9. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
10. _GC-08-051-1-62
AACCGGTTCCTTCTCCTTCCTTCC___AC
11. _GC-08-51-1-62
AAGGGG______AAAG___AA___AAGGGGAC
12. _8162_2
AA_________CC______CC______TTCC___AC
13. _8162_3
AA_________CC______CC______TTCC___AC
14. _8162_5
AA_________CC______CC______TTCC___AC
15. _8162_6
AA_________CC______CC______TTCC___AC
16. _8162_8
AA_________CC______CC______TTCC___AC
17. _8162_9
AA_________CC______CC______TTCC___AC
18. _8162_10
AA_________CC______CC______TTCC___AC
19. _8162_1_>_FP
AA_________CC______CC______TTCC___AC
20. _8162_4_>_FP
AA_________CC______CC______TTCC___AC
21. _8162_7_>_FP
AA_________CC______CC______TTCC___AC
22. _MARPER_D_633
AA_________CC______CC______TTCC___AC
23. _Marper_D_633
AA_________CC______CC______TTCC___AC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
2. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
3. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
4. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
5. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
6. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
7. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
8. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
9. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
10. _GC-08-051-1-62
GGTTCCCTGGAGCTAAAGACAACCX_XX_X
11. _GC-08-51-1-62
GGAAGGAGCCAGAGAA___ACAACCX_XX_X
12. _8162_2
___TT___CTGGAGCT_______________X_XX_X
13. _8162_3
___TT___CTGGAGCT_______________X_XX_X
14. _8162_5
___TT___CTGGAGCT_______________X_XX_X
15. _8162_6
___TT___CTGGAGCT_______________X_XX_X
16. _8162_8
___TT___CTGGAGCT_______________X_XX_X
17. _8162_9
___TT___CTGGAGCT_______________X_XX_X
18. _8162_10
___TT___CTGGAGCT_______________X_XX_X
19. _8162_1_>_FP
___TT___CTGGAGCT_______________X_XX_X
20. _8162_4_>_FP
___TT___CTGGAGCT_______________X_XX_X
21. _8162_7_>_FP
___TT___CTGGAGCT_______________X_XX_X
22. _MARPER_D_633
___TT___CTGGAGCT_______________X_XX_X
23. _Marper_D_633
___TT___CTGGAGCT_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PA_72_[PER] GC-08-051-1-62
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._PA_72_[PER] GC-08-051-1-62
Location: Tree: 2
Notes: 2
 Mars, 2018
3._PA_72_[PER] GC-08-051-1-62
Location: Tree: 3
Notes: 3
 Mars, 2018
4._PA_72_[PER] GC-08-051-1-62
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018
5._PA_72_[PER] GC-08-051-1-62
Location: Tree: 5
Notes: 5
 Mars, 2018
6._PA_72_[PER] GC-08-051-1-62
Location: Tree: 6
Notes: 6
 Mars, 2018
7._PA_72_[PER] GC-08-051-1-62
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018
8._PA_72_[PER] GC-08-051-1-62
Location: Tree: 8
Notes: 8
 Mars, 2018
9._PA_72_[PER] GC-08-051-1-62
Location: Tree: 9
Notes: 9
 Mars, 2018
10._PA_72_[PER] GC-08-051-1-62
Location: Tree: 10
Notes: 10
 Mars, 2018
11._PA_72_[PER] GC-08-51-1-62
Location: Field: 8, Block: 1, Rep: 62, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
12._PA_72_[PER]
Location: 8162 2
 Dapeng Zhang, 2016
13._PA_72_[PER]
Location: 8162 3
 Dapeng Zhang, 2016
14._PA_72_[PER]
Location: 8162 5
 Dapeng Zhang, 2016
15._PA_72_[PER]
Location: 8162 6
 Dapeng Zhang, 2016
16._PA_72_[PER]
Location: 8162 8
 Dapeng Zhang, 2016
17._PA_72_[PER]
Location: 8162 9
 Dapeng Zhang, 2016
18._PA_72_[PER]
Location: 8162 10
 Dapeng Zhang, 2016
19._PA_72_[PER]
Location: 8162 1 > FP
 Dapeng Zhang, 2016
20._PA_72_[PER]
Location: 8162 4 > FP
 Dapeng Zhang, 2016
21._PA_72_[PER]
Location: 8162 7 > FP
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

22._PA_72_[PER]
Location: MARPER D 633
 Dapeng Zhang, 2014
23._PA_72_[PER]
Location: Marper D 633
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133