Genome / Transcriptome

Filters      
Focus of Study: disease reaction

References / BioProjects 5

1 Baruah I.K., Ali S.S., Shao J., Lary D. & Bailey B.A. (2022)
Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection. Frontiers in Plant Science 12: 780805
 View More
BioProject: PRJNA785999  NCBI   ENA 
Focus of study: disease reaction
Library Source: transcriptomic  
BioSamples: 13 3 clones | Runs: 13 | Experiments: 13 | SampleSource: 1
 

 
2 Julio Alfonso Chia Wong, Didier Pierre Louis Clement, Pierre Mournet, Analine dos Santos Nascimento, José Luis Solís Bonilla, Uilson Vanderlei Lopes, Jose Luis Pires & Karina Peres Gramacho (2022)
A high-density genetic map from a cacao F2 progeny and QTL detection for resistance to witches’ broom disease. Tree Genetics & Genomes 18, 31
 View More
BioProject: PRJNA641269  NCBI   ENA 
Focus of study: disease reaction
Library Source: genomic  
BioSamples: 583 4 clones | Runs: 583 | Experiments: 583 | SampleSource: 1
 

 
3 CPCRI (2021)
Transcriptome analysis of cocoa pods, infected by Phytophthora palmivora (black pod disease condition).
 View More
BioProject: PRJNA604260  NCBI   ENA 
Focus of study: disease reaction
Library Source: transcriptomic  
BioSamples: 3 | Runs: 3 | Experiments: 3 | SampleSource: 1
 
View data
 
4 Jaime A Osorio-Guarín, Jhon A Berdugo-Cely, Roberto A Coronado-Silva, Eliana Baez, Yeirme Jaimes, Roxana Yockteng (2020)
Genome-Wide Association Study Reveals Novel Candidate Genes Associated with Productivity and Disease Resistance to Moniliophthora spp. in Cacao (Theobroma cacao L.). G3 Genes|Genomes|Genetics, Volume 10, Issue 5, Pages 1713–1725
 View More
BioProject: PRJNA734904  NCBI   ENA 
Focus of study: disease reaction | productivity  
| population analysis  
Library Source: genomic  
BioSamples: 229 228 clones | Runs: 229 | Experiments: 229 | SampleSource: 1
 

 
5 Guiltinan, Mark (2019)
Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI
 View More
BioProject: PRJNA558793  NCBI   ENA 
Focus of study: disease reaction
Library Source: genomic  
BioSamples: 31 31 clones | Runs: 134 | Experiments: 134 | SampleSource: 1
 
Library Source: transcriptomic  
BioSamples: 31 31 clones | Runs: 31 | Experiments: 31 | SampleSource: 1
 

 

Plants 259

1 ABC 7   View

2 AMAZ 12   View

3 AMAZ 15 /15   View

4 B 97 61 /B-2 [BLZ]   View

5 CAP 34   View

6 CATONGO   View

7 CCN 51   View

8 CHOCO774   View

9 CHOCOLATE 1   View

10 CHOCOLATE 2   View

11 CHOCOLATE 4   View

12 COCA 3370 /5 [CHA]   View

13 CR 1 [COL]   View

14 CR 11 [COL]   View

15 CR 35 [COL]   View

16 CR 38 [COL]   View

17 CR 43 [COL]   View

18 CRICF 13   View

19 CRICF 16   View

20 DON-DIEGO   View

21 EBC 6   View

22 EBC 9   View

23 EBC 27   View

24 EBC 29   View

25 EBC 48   View

26 EBC 58   View

27 EBC 119   View

28 EBC 143   View

29 EBC 148   View

30 EET 6 [ECU]   View

31 EET 12 [ECU]   View

32 EET 59 [ECU]   View

33 EET 61 [ECU]   View

34 EET 62 [ECU]   View

35 EET 184 [ECU]   View

36 EET 377 [ECU]   View

37 EET 399 [ECU]   View

38 EET 400 [ECU]   View

39 ELP 37 A   View

40 FCM 1   View

41 FCM 3   View

42 FCM 5   View

43 FCM 8   View

44 FCM 9   View

45 FCM 11   View

46 FCM 12   View

47 FCM 15   View

48 FCM 17   View

49 FCM 18   View

50 FCM 19   View

51 FCM 20   View

52 FCM 22   View

53 FCM 23   View

54 FCM 26   View

55 FCM 28   View

56 FCM 29   View

57 FCM 30   View

58 FCM 31   View

59 FCM 33   View

60 FCM 39   View

61 FCM 40   View

62 GS 6   View

63 GS 10   View

64 GS 29   View

65 GU 123 /V   View

66 GU 195 /V   View

67 GU 257 /E   View

68 HUILA A   View  Synonyms: POBLACION-HUILA

69 ICA 1   View

70 ICA 2   View

71 ICA 10   View

72 ICA 13   View

73 ICA 70 [COL]   View

74 ICA 83 698   View  Synonyms: 830698

75 ICA 83 699   View  Synonyms: 830699

76 ICA 83 702   View  Synonyms: 830702

77 ICA 83 703   View  Synonyms: 830703

78 ICA 83 704   View  Synonyms: 830704

79 ICA 83 710   View  Synonyms: 830710

80 ICA 83 713   View  Synonyms: 830713

81 ICA 83 714   View  Synonyms: 830714

82 ICA 83 715   View  Synonyms: 830715

83 ICA 83 716   View  Synonyms: 830716

84 ICA 83 720   View  Synonyms: 830720

85 ICA 83 723   View  Synonyms: 830723

86 ICA 83 736   View  Synonyms: 830736

87 ICA 83 740   View  Synonyms: 830740

88 ICA 83 745   View  Synonyms: 830745

89 ICA 83 746   View  Synonyms: 830746

90 ICA 83 747   View  Synonyms: 830747

91 ICA 83 752   View  Synonyms: 830752

92 ICA 83 755   View  Synonyms: 830755

93 ICA 83 758   View  Synonyms: 830758

94 ICA 83 759   View  Synonyms: 830759

95 ICA 83 761   View  Synonyms: 830761

96 ICA 83 763   View  Synonyms: 830763

97 ICA 84 777   View  Synonyms: 840777

98 ICA 84 778   View  Synonyms: 840778

99 ICA 86 1309   View  Synonyms: 861309

100 ICA 86 1310   View  Synonyms: 861310

101 ICA 86 1311   View  Synonyms: 861311

102 ICA 86 1312   View  Synonyms: 861312

103 ICA 86 1315   View  Synonyms: 861315

104 ICA 86 1317   View  Synonyms: 861317

105 ICA 86 1319   View  Synonyms: 861319

106 ICA 86 1321   View  Synonyms: 861321

107 ICA 86 1340   View  Synonyms: 861340

108 ICA 86 1370   View  Synonyms: 861370

109 ICA 86 1371   View  Synonyms: 861371

110 ICA 86 1372   View  Synonyms: 861372

111 ICA 86 1406   View  Synonyms: 861406

112 ICA 86 1610   View  Synonyms: 861610

113 ICA 86 1611   View  Synonyms: 861611

114 ICA 86 1613   View  Synonyms: 861613

115 ICA 86 1614   View  Synonyms: 861614

116 ICA 86 1618   View  Synonyms: 861618

117 ICA 86 1619   View  Synonyms: 861619

118 ICA 86 1622   View  Synonyms: 861622

119 ICA 86 1623   View  Synonyms: 861623

120 ICA 86 1645   View  Synonyms: 861645

121 ICA 86 1648   View  Synonyms: 861648

122 ICA 86 1654   View  Synonyms: 861654

123 ICA 86 1683   View  Synonyms: 861683

124 ICA 87 1854   View  Synonyms: 871854

125 ICA 212 [COL]   View

126 ICS 1   View

127 ICS 6   View

128 ICS 39   View

129 ICS 40   View

130 ICS 48   View

131 ICS 60   View

132 ICS 78   View

133 ICS 95   View

134 ICS 95 A   View

135 ICS 98   View

136 IMC 31   View

137 IMC 57   View

138 IMC 60   View

139 IMC 67   View

140 IMC 105   View

141 KER 1-L   View

142 KER 6   View

143 LOLITA-WALK1   View

144 LUKER 40   View

145 LUKER 50   View

146 MON 1   View

147 NA 33   View

148 NA 34   View

149 NA 70   View

150 NA 246   View

151 NA 710   View

152 NA 807   View

153 NA 916   View

154 OYA 2 B   View

155 PA 13 [PER]   View

156 PA 16 [PER]   View

157 PA 35 [PER]   View

158 PA 46 [PER]   View

159 PA 67 [PER]   View

160 PA 71 [PER]   View

161 PA 81 [PER]   View

162 PA 107 [PER]   View

163 PA 121 [PER]   View

164 PA 150 [PER]   View

165 PA 279 [PER]   View

166 PA 299 [PER]   View

167 PENTAGONA /V   View  Synonyms: PENTAGONA /VERDE

168 PERSEA 1   View

169 PERSEA 2   View

170 PINA 1   View  Synonyms: PINA

171 POUND 7   View  Synonyms: P 7 [POU]

172 POUND 12   View  Synonyms: P 12 [POU]

173 POUND 18   View  Synonyms: P 18 [POU]

174 PUEBLO-BELLO   View

175 RIM 2 [MEX]   View  Synonyms: R 2 [MEX]

176 RIM 13 [MEX]   View  Synonyms: R 13 [MEX]

177 RIM 41 [MEX]   View  Synonyms: R 41 [MEX]

178 RIM 105 [MEX]   View  Synonyms: R 105 [MEX]

179 SAN MARTINERO   View

180 SAN MIGUEL 1 [CHA]   View  Synonyms: SM 1 [CHA]

181 SC 1 [COL]   View

182 SC 5 [COL]   View

183 SC 6 [COL]   View

184 SC 11 [COL]   View

185 SC 14 [COL]   View

186 SC 24 [COL]   View

187 SC 32 [COL]   View

188 SC 34 [COL]   View

189 SC 38 [COL]   View

190 SC 41 [COL]   View

191 SC 45 [COL]   View

192 SC 49 [COL]   View

193 SC 51 [COL]   View

194 SC 56 [COL]   View

195 SC 78 [COL]   View  Synonyms: C 58 [COL]

196 SCA 6   View

197 SCA 9   View

198 SCA 12   View

199 SCC 21 [COR]   View

200 SCC 61 [COR]   View

201 SCC 85 [COR]   View

202 SCC 86 [COR]   View

203 SOPETRAN 12   View

204 SPA 5 [COL]   View

205 SPA 9 [COL]   View

206 SPA 10 [COL]   View

207 SPA 12 [COL]   View

208 SPA 13 [COL]   View

209 SPA 19 [COL]   View

210 SPEC 54 /1   View

211 SUI 2   View

212 SUI 39   View

213 SUI 44   View

214 SUI 61   View

215 SUI 69   View

216 SUI 72   View

217 SUI 75   View

218 SUI 83   View

219 SUI 99   View

220 SUI 100   View

221 TCS 1   View

222 TCS 6   View

223 TCS 13   View

224 TCS 19   View

225 TCS 22   View

226 TCS 24   View

227 TCS 25   View

228 TCS 26   View

229 TCS 29   View

230 TCS 30   View

231 TCS 31   View

232 TCS 34   View

233 TCS 35   View

234 TCS 36   View

235 TCS 37   View

236 TCS 38   View

237 TCS 39   View

238 TO 5   View

239 TSA 641   View  Synonyms: TSA 141

240 TSA 644   View

241 TSAN 792   View  Synonyms: TSH 792

242 TSAN 812   View  Synonyms: TSH 812

243 TSH 516 (SCA 6 x ICS 1) - F2 population   View

244 TSH 565   View

245 TSH 660   View

246 TUMACO   View  Synonyms: POBLACION-TUMACO

247 TUMACO 2   View

248 TUMACO 3   View

249 TUMACO 5   View

250 TUMACO 6   View

251 TUMACO 7   View

252 Trinidad   View

253 UF 29   View

254 UF 273   View

255 UF 650   View  Synonyms: EET 8 [IMP]

256 UF 667   View

257 UF 676   View

258 UF 677   View  Synonyms: EET 9 [IMP]

259 UF 700   View