Genome / Transcriptome

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Library Source: transcriptomic

References / BioProjects 6

1 Baruah I.K., Ali S.S., Shao J., Lary D. & Bailey B.A. (2022)
Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection. Frontiers in Plant Science 12: 780805
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BioProject: PRJNA785999  NCBI   ENA 
Focus of study: disease reaction  
Library Source: transcriptomic
BioSamples: 13 3 clones | Runs: 13 | Experiments: 13 | SampleSource: 1
 

 
2 Adriana M. Gallego, Luisa F. Rojas, Wilmar G. Valencia, Lucía Atehortúa, Aura I. Urrea, Andrew S. Fister, Mark J. Guiltinan, Siela N. Maximova & Natalia Pabón-Mora (2021)
Transcriptomic analyses of cacao flavonoids produced in photobioreactors. BMC Genomics 22, 551
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BioProject: PRJNA742476  NCBI   ENA 
Focus of study: photobioreactors  
Library Source: transcriptomic
BioSample: 1 | Runs: 12 | Experiments: 12 | SampleSource: 1
 
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3 CPCRI (2021)
Transcriptome analysis of cocoa pods, infected by Phytophthora palmivora (black pod disease condition).
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BioProject: PRJNA604260  NCBI   ENA 
Focus of study: disease reaction  
Library Source: transcriptomic
BioSamples: 3 | Runs: 3 | Experiments: 3 | SampleSource: 1
 
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4 Fupeng Li, Baoduo Wu, Lin Yan, Xiaowei Qin & Jianxiong Lai (2021)
Metabolome and transcriptome profiling of Theobroma cacao provides insights into the molecular basis of pod color variation. Journal of Plant Research 134:1323–1334
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BioProject: PRJNA613342  NCBI   ENA 
Focus of study: pod colour  
Library Source: transcriptomic
BioSamples: 9 3 clones | Runs: 9 | Experiments: 9 | SampleSource: 1
 

 
5 Wuhan University, China (2021)
Theobroma cacao Raw sequence reads. NCBI/ERA submission
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BioProject: PRJNA714293  NCBI   ENA 
Focus of study: monoisolate  
Library Source: transcriptomic
BioSample: 1 | Runs: 3 | Experiments: 3 | SampleSource: 1
 
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6 Guiltinan, Mark (2019)
Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI
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BioProject: PRJNA558793  NCBI   ENA 
Focus of study: disease reaction  
Library Source: genomic
BioSamples: 31 31 clones | Runs: 134 | Experiments: 134 | SampleSource: 1
 
Library Source: transcriptomic
BioSamples: 31 31 clones | Runs: 31 | Experiments: 31 | SampleSource: 1
 

 

Plants 36

1 AMAZ 12   View

2 AMAZ 15 /15   View

3 CCN 51   View

4 COCA 3370 /5 [CHA]   View

5 ELP 37 A   View

6 GU 123 /V   View

7 GU 195 /V   View

8 GU 257 /E   View

9 ICS 1   View

10 IMC 31   View

11 IMC 57   View

12 IMC 60   View

13 IMC 105   View

14 KER 1-L   View

15 KER 6   View

16 NA 33   View

17 NA 34   View

18 NA 70   View

19 NA 246   View

20 NA 710   View

21 NA 807   View

22 NA 916   View

23 OYA 2 B   View

24 PA 13 [PER]   View

25 PA 16 [PER]   View

26 PA 71 [PER]   View

27 PA 81 [PER]   View

28 PA 107 [PER]   View

29 PA 279 [PER]   View

30 PA 299 [PER]   View

31 PINA 1   View  Synonyms: PINA

32 POUND 7   View

33 SPEC 54 /1   View

34 TAS 166   View

35 TAS 168   View

36 TAS 410   View