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Guiltinan, Mark (2019) Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI

SampleName	Clone name	Data type	Run	Experiment	BioSample	SampleSource	Tree ID
AMAZ-12	AMAZ 12	genomic	SRR9938280 NCBI ENA	SRX6686843	SAMN12500392	CRI001	P000003
AMAZ-12	AMAZ 12	genomic	SRR9938279 NCBI ENA	SRX6686844	SAMN12500392	CRI001	P000003
AMAZ-12	AMAZ 12	genomic	SRR9938273 NCBI ENA	SRX6686850	SAMN12500392	CRI001	P000003
AMAZ-12	AMAZ 12	genomic	SRR14022545 NCBI ENA	SRX10399130	SAMN12500392	CRI001	P000003
AMAZ-12	AMAZ 12	genomic	SRR14022544 NCBI ENA	SRX10399131	SAMN12500392	CRI001	P000003
AMAZ-12	AMAZ 12	transcriptomic	SRR9938231 NCBI ENA	SRX6686892	SAMN12500392	CRI001	P000003
Amaz-15/15	AMAZ 15 /15	genomic	SRR9938290 NCBI ENA	SRX6686833	SAMN12500390	CRI001	P000004
Amaz-15/15	AMAZ 15 /15	genomic	SRR9938289 NCBI ENA	SRX6686834	SAMN12500390	CRI001	P000004
Amaz-15/15	AMAZ 15 /15	genomic	SRR9938284 NCBI ENA	SRX6686839	SAMN12500390	CRI001	P000004
Amaz-15/15	AMAZ 15 /15	genomic	SRR14022549 NCBI ENA	SRX10399126	SAMN12500390	CRI001	P000004
Amaz-15/15	AMAZ 15 /15	genomic	SRR14022548 NCBI ENA	SRX10399127	SAMN12500390	CRI001	P000004
Amaz-15/15	AMAZ 15 /15	transcriptomic	SRR9938229 NCBI ENA	SRX6686894	SAMN12500390	CRI001	P000004
COCA-3370-5	COCA 3370 /5 [CHA]	genomic	SRR9938283 NCBI ENA	SRX6686840	SAMN12500389	CRI001	P000007
COCA-3370-5	COCA 3370 /5 [CHA]	genomic	SRR9938282 NCBI ENA	SRX6686841	SAMN12500389	CRI001	P000007
COCA-3370-5	COCA 3370 /5 [CHA]	genomic	SRR9938281 NCBI ENA	SRX6686842	SAMN12500389	CRI001	P000007
COCA-3370-5	COCA 3370 /5 [CHA]	genomic	SRR14022551 NCBI ENA	SRX10399124	SAMN12500389	CRI001	P000007
COCA-3370-5	COCA 3370 /5 [CHA]	genomic	SRR14022550 NCBI ENA	SRX10399125	SAMN12500389	CRI001	P000007
COCA-3370-5	COCA 3370 /5 [CHA]	transcriptomic	SRR9938228 NCBI ENA	SRX6686895	SAMN12500389	CRI001	P000007
ELP-37A	ELP 37 A	genomic	SRR9938270 NCBI ENA	SRX6686853	SAMN12500403	CRI001	P000157
ELP-37A	ELP 37 A	genomic	SRR9938269 NCBI ENA	SRX6686854	SAMN12500403	CRI001	P000157
ELP-37A	ELP 37 A	genomic	SRR9938268 NCBI ENA	SRX6686855	SAMN12500403	CRI001	P000157
ELP-37A	ELP 37 A	genomic	SRR14022529 NCBI ENA	SRX10399146	SAMN12500403	CRI001	P000157
ELP-37A	ELP 37 A	transcriptomic	SRR9938247 NCBI ENA	SRX6686876	SAMN12500403	CRI001	P000157
GU-123V	GU 123 /V	genomic	SRR9938317 NCBI ENA	SRX6686806	SAMN12500400	CRI001	P000128
GU-123V	GU 123 /V	genomic	SRR9938314 NCBI ENA	SRX6686809	SAMN12500400	CRI001	P000128
GU-123V	GU 123 /V	genomic	SRR9938313 NCBI ENA	SRX6686810	SAMN12500400	CRI001	P000128
GU-123V	GU 123 /V	genomic	SRR14022533 NCBI ENA	SRX10399142	SAMN12500400	CRI001	P000128
GU-123V	GU 123 /V	transcriptomic	SRR9938250 NCBI ENA	SRX6686873	SAMN12500400	CRI001	P000128
GU-195V	GU 195 /V	genomic	SRR9938337 NCBI ENA	SRX6686786	SAMN12500401	CRI001	P000139
GU-195V	GU 195 /V	genomic	SRR9938336 NCBI ENA	SRX6686787	SAMN12500401	CRI001	P000139
GU-195V	GU 195 /V	genomic	SRR9938335 NCBI ENA	SRX6686788	SAMN12500401	CRI001	P000139
GU-195V	GU 195 /V	genomic	SRR14022532 NCBI ENA	SRX10399143	SAMN12500401	CRI001	P000139
GU-195V	GU 195 /V	transcriptomic	SRR9938249 NCBI ENA	SRX6686874	SAMN12500401	CRI001	P000139
GU-257E	GU 257 /E	genomic	SRR9938329 NCBI ENA	SRX6686794	SAMN12500396	CRI001	P000144
GU-257E	GU 257 /E	genomic	SRR9938327 NCBI ENA	SRX6686796	SAMN12500396	CRI001	P000144
GU-257E	GU 257 /E	genomic	SRR9938326 NCBI ENA	SRX6686797	SAMN12500396	CRI001	P000144
GU-257E	GU 257 /E	genomic	SRR14022537 NCBI ENA	SRX10399138	SAMN12500396	CRI001	P000144
GU-257E	GU 257 /E	transcriptomic	SRR9938223 NCBI ENA	SRX6686900	SAMN12500396	CRI001	P000144
IMC-105	IMC 105	genomic	SRR9938278 NCBI ENA	SRX6686845	SAMN12500393	CRI001	P000011
IMC-105	IMC 105	genomic	SRR9938277 NCBI ENA	SRX6686846	SAMN12500393	CRI001	P000011
IMC-105	IMC 105	genomic	SRR9938272 NCBI ENA	SRX6686851	SAMN12500393	CRI001	P000011
IMC-105	IMC 105	genomic	SRR14022543 NCBI ENA	SRX10399132	SAMN12500393	CRI001	P000011
IMC-105	IMC 105	transcriptomic	SRR9938232 NCBI ENA	SRX6686891	SAMN12500393	CRI001	P000011
IMC-31	IMC 31	genomic	SRR9938333 NCBI ENA	SRX6686790	SAMN12500394	CRI001	P000022
IMC-31	IMC 31	genomic	SRR9938332 NCBI ENA	SRX6686791	SAMN12500394	CRI001	P000022
IMC-31	IMC 31	genomic	SRR9938271 NCBI ENA	SRX6686852	SAMN12500394	CRI001	P000022
IMC-31	IMC 31	genomic	SRR14022541 NCBI ENA	SRX10399134	SAMN12500394	CRI001	P000022
IMC-31	IMC 31	genomic	SRR14022540 NCBI ENA	SRX10399135	SAMN12500394	CRI001	P000022
IMC-31	IMC 31	transcriptomic	SRR9938233 NCBI ENA	SRX6686890	SAMN12500394	CRI001	P000022
IMC-57	IMC 57	genomic	SRR9938331 NCBI ENA	SRX6686792	SAMN12500395	CRI001	P000032
IMC-57	IMC 57	genomic	SRR9938330 NCBI ENA	SRX6686793	SAMN12500395	CRI001	P000032
IMC-57	IMC 57	genomic	SRR9938328 NCBI ENA	SRX6686795	SAMN12500395	CRI001	P000032
IMC-57	IMC 57	genomic	SRR14022539 NCBI ENA	SRX10399136	SAMN12500395	CRI001	P000032
IMC-57	IMC 57	genomic	SRR14022538 NCBI ENA	SRX10399137	SAMN12500395	CRI001	P000032
IMC-57	IMC 57	transcriptomic	SRR9938234 NCBI ENA	SRX6686889	SAMN12500395	CRI001	P000032
IMC-60	IMC 60	genomic	SRR9938276 NCBI ENA	SRX6686847	SAMN12500391	CRI001	P000038
IMC-60	IMC 60	genomic	SRR9938275 NCBI ENA	SRX6686848	SAMN12500391	CRI001	P000038
IMC-60	IMC 60	genomic	SRR9938274 NCBI ENA	SRX6686849	SAMN12500391	CRI001	P000038
IMC-60	IMC 60	genomic	SRR14022547 NCBI ENA	SRX10399128	SAMN12500391	CRI001	P000038
IMC-60	IMC 60	genomic	SRR14022546 NCBI ENA	SRX10399129	SAMN12500391	CRI001	P000038
IMC-60	IMC 60	transcriptomic	SRR9938230 NCBI ENA	SRX6686893	SAMN12500391	CRI001	P000038
KER-1L	KER 1-L	genomic	SRR9938318 NCBI ENA	SRX6686805	SAMN12500399	CRI001	P000164
KER-1L	KER 1-L	genomic	SRR9938316 NCBI ENA	SRX6686807	SAMN12500399	CRI001	P000164
KER-1L	KER 1-L	genomic	SRR9938315 NCBI ENA	SRX6686808	SAMN12500399	CRI001	P000164
KER-1L	KER 1-L	genomic	SRR14022534 NCBI ENA	SRX10399141	SAMN12500399	CRI001	P000164
KER-1L	KER 1-L	transcriptomic	SRR9938251 NCBI ENA	SRX6686872	SAMN12500399	CRI001	P000164
KER-6	KER 6	genomic	SRR9938339 NCBI ENA	SRX6686784	SAMN12500402	CRI001	P000169
KER-6	KER 6	genomic	SRR9938267 NCBI ENA	SRX6686856	SAMN12500402	CRI001	P000169
KER-6	KER 6	genomic	SRR9938266 NCBI ENA	SRX6686857	SAMN12500402	CRI001	P000169
KER-6	KER 6	genomic	SRR14022530 NCBI ENA	SRX10399145	SAMN12500402	CRI001	P000169
KER-6	KER 6	transcriptomic	SRR9938248 NCBI ENA	SRX6686875	SAMN12500402	CRI001	P000169
NA-246	NA 246	genomic	SRR9938338 NCBI ENA	SRX6686785	SAMN12500404	CRI001	P000056
NA-246	NA 246	genomic	SRR9938312 NCBI ENA	SRX6686811	SAMN12500404	CRI001	P000056
NA-246	NA 246	genomic	SRR9938306 NCBI ENA	SRX6686817	SAMN12500404	CRI001	P000056
NA-246	NA 246	genomic	SRR14022528 NCBI ENA	SRX10399147	SAMN12500404	CRI001	P000056
NA-246	NA 246	genomic	SRR14022527 NCBI ENA	SRX10399148	SAMN12500404	CRI001	P000056
NA-246	NA 246	transcriptomic	SRR9938246 NCBI ENA	SRX6686877	SAMN12500404	CRI001	P000056
NA-33	NA 33	genomic	SRR9938303 NCBI ENA	SRX6686820	SAMN12500386	CRI001	P000190
NA-33	NA 33	genomic	SRR9938302 NCBI ENA	SRX6686821	SAMN12500386	CRI001	P000190
NA-33	NA 33	genomic	SRR9938300 NCBI ENA	SRX6686823	SAMN12500386	CRI001	P000190
NA-33	NA 33	genomic	SRR14022516 NCBI ENA	SRX10399159	SAMN12500386	CRI001	P000190
NA-33	NA 33	transcriptomic	SRR9938308 NCBI ENA	SRX6686815	SAMN12500386	CRI001	P000190
NA-34	NA 34	genomic	SRR9938301 NCBI ENA	SRX6686822	SAMN12500385	CRI001	P000066
NA-34	NA 34	genomic	SRR9938299 NCBI ENA	SRX6686824	SAMN12500385	CRI001	P000066
NA-34	NA 34	genomic	SRR9938298 NCBI ENA	SRX6686825	SAMN12500385	CRI001	P000066
NA-34	NA 34	genomic	SRR14022518 NCBI ENA	SRX10399157	SAMN12500385	CRI001	P000066
NA-34	NA 34	genomic	SRR14022517 NCBI ENA	SRX10399158	SAMN12500385	CRI001	P000066
NA-34	NA 34	transcriptomic	SRR9938323 NCBI ENA	SRX6686800	SAMN12500385	CRI001	P000066
NA-70	NA 70	genomic	SRR9938305 NCBI ENA	SRX6686818	SAMN12500387	CRI001	P000070
NA-70	NA 70	genomic	SRR9938304 NCBI ENA	SRX6686819	SAMN12500387	CRI001	P000070
NA-70	NA 70	genomic	SRR9938285 NCBI ENA	SRX6686838	SAMN12500387	CRI001	P000070
NA-70	NA 70	genomic	SRR14022515 NCBI ENA	SRX10399160	SAMN12500387	CRI001	P000070
NA-70	NA 70	genomic	SRR14022514 NCBI ENA	SRX10399161	SAMN12500387	CRI001	P000070
NA-70	NA 70	transcriptomic	SRR9938307 NCBI ENA	SRX6686816	SAMN12500387	CRI001	P000070
NA-710	NA 710	genomic	SRR9938244 NCBI ENA	SRX6686879	SAMN12500383	CRI001	P000072
NA-710	NA 710	genomic	SRR9938240 NCBI ENA	SRX6686883	SAMN12500383	CRI001	P000072
NA-710	NA 710	genomic	SRR9938239 NCBI ENA	SRX6686884	SAMN12500383	CRI001	P000072
NA-710	NA 710	genomic	SRR14022542 NCBI ENA	SRX10399133	SAMN12500383	CRI001	P000072
NA-710	NA 710	genomic	SRR14022531 NCBI ENA	SRX10399144	SAMN12500383	CRI001	P000072
NA-710	NA 710	transcriptomic	SRR9938217 NCBI ENA	SRX6686906	SAMN12500383	CRI001	P000072
NA-807	NA 807	genomic	SRR9938297 NCBI ENA	SRX6686826	SAMN12500384	CRI001	P000076
NA-807	NA 807	genomic	SRR9938296 NCBI ENA	SRX6686827	SAMN12500384	CRI001	P000076
NA-807	NA 807	genomic	SRR9938243 NCBI ENA	SRX6686880	SAMN12500384	CRI001	P000076
NA-807	NA 807	genomic	SRR14022520 NCBI ENA	SRX10399155	SAMN12500384	CRI001	P000076
NA-807	NA 807	transcriptomic	SRR9938220 NCBI ENA	SRX6686903	SAMN12500384	CRI001	P000076
NA-916	NA 916	genomic	SRR9938242 NCBI ENA	SRX6686881	SAMN12500382	CRI001	P000078
NA-916	NA 916	genomic	SRR9938241 NCBI ENA	SRX6686882	SAMN12500382	CRI001	P000078
NA-916	NA 916	genomic	SRR9938235 NCBI ENA	SRX6686888	SAMN12500382	CRI001	P000078
NA-916	NA 916	genomic	SRR14022553 NCBI ENA	SRX10399122	SAMN12500382	CRI001	P000078
NA-916	NA 916	transcriptomic	SRR9938218 NCBI ENA	SRX6686905	SAMN12500382	CRI001	P000078
OYA-2B	OYA 2 B	genomic	SRR9938325 NCBI ENA	SRX6686798	SAMN12500397	CRI001	P000172
OYA-2B	OYA 2 B	genomic	SRR9938324 NCBI ENA	SRX6686799	SAMN12500397	CRI001	P000172
OYA-2B	OYA 2 B	genomic	SRR9938320 NCBI ENA	SRX6686803	SAMN12500397	CRI001	P000172
OYA-2B	OYA 2 B	genomic	SRR14022536 NCBI ENA	SRX10399139	SAMN12500397	CRI001	P000172
OYA-2B	OYA 2 B	transcriptomic	SRR9938224 NCBI ENA	SRX6686899	SAMN12500397	CRI001	P000172
PA-107	PA 107 [PER]	genomic	SRR9938259 NCBI ENA	SRX6686864	SAMN12500410	CRI001	P000087
PA-107	PA 107 [PER]	genomic	SRR9938226 NCBI ENA	SRX6686897	SAMN12500410	CRI001	P000087
PA-107	PA 107 [PER]	genomic	SRR9938225 NCBI ENA	SRX6686898	SAMN12500410	CRI001	P000087
PA-107	PA 107 [PER]	genomic	SRR14022521 NCBI ENA	SRX10399154	SAMN12500410	CRI001	P000087
PA-107	PA 107 [PER]	transcriptomic	SRR9938262 NCBI ENA	SRX6686861	SAMN12500410	CRI001	P000087
PA-13	PA 13 [PER]	genomic	SRR9938293 NCBI ENA	SRX6686830	SAMN12500406	CRI001	P000094
PA-13	PA 13 [PER]	genomic	SRR9938292 NCBI ENA	SRX6686831	SAMN12500406	CRI001	P000094
PA-13	PA 13 [PER]	genomic	SRR9938291 NCBI ENA	SRX6686832	SAMN12500406	CRI001	P000094
PA-13	PA 13 [PER]	genomic	SRR14022525 NCBI ENA	SRX10399150	SAMN12500406	CRI001	P000094
PA-13	PA 13 [PER]	transcriptomic	SRR9938255 NCBI ENA	SRX6686868	SAMN12500406	CRI001	P000094
PA-16	PA 16 [PER]	genomic	SRR9938295 NCBI ENA	SRX6686828	SAMN12500405	CRI001	P000101
PA-16	PA 16 [PER]	genomic	SRR9938294 NCBI ENA	SRX6686829	SAMN12500405	CRI001	P000101
PA-16	PA 16 [PER]	genomic	SRR14022526 NCBI ENA	SRX10399149	SAMN12500405	CRI001	P000101
PA-16	PA 16 [PER]	genomic	SRR9938334 NCBI ENA	SRX6686789	SAMN12500405	CRI001	P000101
PA-16	PA 16 [PER]	transcriptomic	SRR9938245 NCBI ENA	SRX6686878	SAMN12500405	CRI001	P000101
PA-279	PA 279 [PER]	genomic	SRR14022524 NCBI ENA	SRX10399151	SAMN12500407	CRI001	P000105
PA-279	PA 279 [PER]	genomic	SRR9938221 NCBI ENA	SRX6686902	SAMN12500407	CRI001	P000105
PA-279	PA 279 [PER]	genomic	SRR9938222 NCBI ENA	SRX6686901	SAMN12500407	CRI001	P000105
PA-279	PA 279 [PER]	genomic	SRR9938256 NCBI ENA	SRX6686867	SAMN12500407	CRI001	P000105
PA-279	PA 279 [PER]	transcriptomic	SRR9938254 NCBI ENA	SRX6686869	SAMN12500407	CRI001	P000105
PA-299	PA 299 [PER]	genomic	SRR14022522 NCBI ENA	SRX10399153	SAMN12500409	CRI001	P000108
PA-299	PA 299 [PER]	genomic	SRR9938258 NCBI ENA	SRX6686865	SAMN12500409	CRI001	P000108
PA-299	PA 299 [PER]	genomic	SRR9938260 NCBI ENA	SRX6686863	SAMN12500409	CRI001	P000108
PA-299	PA 299 [PER]	genomic	SRR9938261 NCBI ENA	SRX6686862	SAMN12500409	CRI001	P000108
PA-299	PA 299 [PER]	transcriptomic	SRR9938265 NCBI ENA	SRX6686858	SAMN12500409	CRI001	P000108
PA-71	PA 71 [PER]	genomic	SRR14022523 NCBI ENA	SRX10399152	SAMN12500408	CRI001	P000122
PA-71	PA 71 [PER]	genomic	SRR9938219 NCBI ENA	SRX6686904	SAMN12500408	CRI001	P000122
PA-71	PA 71 [PER]	genomic	SRR9938253 NCBI ENA	SRX6686870	SAMN12500408	CRI001	P000122
PA-71	PA 71 [PER]	genomic	SRR9938257 NCBI ENA	SRX6686866	SAMN12500408	CRI001	P000122
PA-71	PA 71 [PER]	transcriptomic	SRR9938264 NCBI ENA	SRX6686859	SAMN12500408	CRI001	P000122
PA-81	PA 81 [PER]	genomic	SRR14022519 NCBI ENA	SRX10399156	SAMN12500411	CRI001	P000123
PA-81	PA 81 [PER]	genomic	SRR9938216 NCBI ENA	SRX6686907	SAMN12500411	CRI001	P000123
PA-81	PA 81 [PER]	genomic	SRR9938309 NCBI ENA	SRX6686814	SAMN12500411	CRI001	P000123
PA-81	PA 81 [PER]	genomic	SRR9938310 NCBI ENA	SRX6686813	SAMN12500411	CRI001	P000123
PA-81	PA 81 [PER]	transcriptomic	SRR9938263 NCBI ENA	SRX6686860	SAMN12500411	CRI001	P000123
Pina	PINA	genomic	SRR14022535 NCBI ENA	SRX10399140	SAMN12500398	CRI001	P000176
Pina	PINA	genomic	SRR9938319 NCBI ENA	SRX6686804	SAMN12500398	CRI001	P000176
Pina	PINA	genomic	SRR9938321 NCBI ENA	SRX6686802	SAMN12500398	CRI001	P000176
Pina	PINA	genomic	SRR9938322 NCBI ENA	SRX6686801	SAMN12500398	CRI001	P000176
Pina	PINA	transcriptomic	SRR9938252 NCBI ENA	SRX6686871	SAMN12500398	CRI001	P000176
Pound-7	POUND 7	genomic	SRR14022554 NCBI ENA	SRX10399121	SAMN12500381	CRI001	P000082
Pound-7	POUND 7	genomic	SRR9938236 NCBI ENA	SRX6686887	SAMN12500381	CRI001	P000082
Pound-7	POUND 7	genomic	SRR9938237 NCBI ENA	SRX6686886	SAMN12500381	CRI001	P000082
Pound-7	POUND 7	genomic	SRR9938238 NCBI ENA	SRX6686885	SAMN12500381	CRI001	P000082
Pound-7	POUND 7	transcriptomic	SRR9938311 NCBI ENA	SRX6686812	SAMN12500381	CRI001	P000082
SPEC-54/1	SPEC 54 /1	genomic	SRR14022552 NCBI ENA	SRX10399123	SAMN12500388	CRI001	P000050
SPEC-54/1	SPEC 54 /1	genomic	SRR9938286 NCBI ENA	SRX6686837	SAMN12500388	CRI001	P000050
SPEC-54/1	SPEC 54 /1	genomic	SRR9938287 NCBI ENA	SRX6686836	SAMN12500388	CRI001	P000050
SPEC-54/1	SPEC 54 /1	genomic	SRR9938288 NCBI ENA	SRX6686835	SAMN12500388	CRI001	P000050
SPEC-54/1	SPEC 54 /1	transcriptomic	SRR9938227 NCBI ENA	SRX6686896	SAMN12500388	CRI001	P000050

Genomic/Transcriptomic Data CSV File