SNP Profiles matching ICS 8

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTCCGGGGCCCCCTTTGGTTCCAT
1._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCAT
2._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCAT
3._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCAT
4._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCAT
5._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCAT
6._NA_95___
AAAATTCCGGGGCCCCCTTTGGTTCCAT
7._ICS_8___
AAAATTCCGGGGCCCC__TTGGTTCCAT
8._ICS_8___
AAAATTCCGGGGCCCCCTTTGGTTCCAT
9._NA_95___
AAAATTCC__GGCCCCCTTTGGTTCCAT
10._ICS_8___
AAAATTCC________CTTTGG______
11._ICS_8___
AAAATTCC________CTTTGG______
12._ICS_8___
AAAATTCC________CTTTGG______
13._ICS_8___
AAAATTCC________CTTTGG______
14._ICS_8___
AAAATTCC________CTTTGG______
15._ICS_8___
AAAATTCC________CTTTGG______
16._ICS_8___
AAAATTCC________CTTTGG______
17._NA_95___
AAAATTCC________CTTTGG______
18._NA_95___
AAAATTCC________CTTTGG______
19._ICS_8___
AAAATTCC__________TTGG______
20._ICS_8___
AAAATTCC________CTTTAG______
21._CRU_104___
____TTCC____TT__CT____TT____
22._CRU_111___
____TTCC____TT__CT____TT____
23._PA_81_[PER]___
AAAATTCC________CTTTGG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAAAGGCGGGTTAATTGGTTAACCGG
1._ICS_8___
CCAAAAGGCGGGTTAATTGGTTAACCGG
2._ICS_8___
CCAAAAGGCGGGTTAATTGGTTAACCGG
3._ICS_8___
CCAAAAGGCGGGTTAATTGGTTAACCGG
4._ICS_8___
CCAAAAGGCGGGTTAATTGGTTAACCGG
5._ICS_8___
CCAAAAGGCGGGTTAATTGGTTAACCGG
6._NA_95___
CCAAAAGGCGGGTTAATTGGTTAACCGG
7._ICS_8___
CCAAAAGGCGGGTTAATTGGTTAACCGG
8._ICS_8___
CCAAAAGGCGGGTTAATT__TTAACCGG
9._NA_95___
CCAAAAGGCGGGTTAATTGGTTAACCGG
10._ICS_8___
____AA____GG________TTAA__GG
11._ICS_8___
____AA____GG________TTAA__GG
12._ICS_8___
____AA____GG________TTAA__GG
13._ICS_8___
____AA____GG________TTAA__GG
14._ICS_8___
____AA____GG________TTAA__GG
15._ICS_8___
____AA____GG________TTAA__GG
16._ICS_8___
____AA____GG________TTAA__GG
17._NA_95___
____AA____GG________TTAA__GG
18._NA_95___
____AA____GG________TTAA__GG
19._ICS_8___
____AA____GG________TTAA__GG
20._ICS_8___
____AA____GG________TTAA__GG
21._CRU_104___
________CG________GG____CCGG
22._CRU_111___
________CG________GG____CCGG
23._PA_81_[PER]___
____AATTCCGG________TTAA__GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAGCCAAGGGTGGTTAATTAACC
1._ICS_8___
AATTGGAGCCAAGGGTGGTTAATTAACC
2._ICS_8___
AATTGGAGCCAAGGGTGGTTAATTAACC
3._ICS_8___
AATTGGAGCCAAGGGTGGTTAATTAACC
4._ICS_8___
AATTGGAGCCAAGGGTGGTTAATTAACC
5._ICS_8___
AATTGGAGCCAAGGGTGGTTAATTAACC
6._NA_95___
AATTGGAGCCAAGGGTGGTTAATTAACC
7._ICS_8___
AATTGGAGCCAAGGGTGGTTAATTAACC
8._ICS_8___
AATTGGAGCCAAGGGTGGTTAATTAACC
9._NA_95___
AATTGGAGCCAAGGGTGGTTAATTAACC
10._ICS_8___
AA______CC__GGGT____AA______
11._ICS_8___
AA______CC__GGGT____AA______
12._ICS_8___
AA______CC__GGGT____AA______
13._ICS_8___
AA______CC__GGGT____AA______
14._ICS_8___
AA______CC__GGGT____AA______
15._ICS_8___
AA______CC__GGGT____AA______
16._ICS_8___
AA______CC__GGGT____AA______
17._NA_95___
AA______CC__GGGT____AA______
18._NA_95___
AA______CC__GGGT____AA______
19._ICS_8___
AA______CC__GGGT____AA______
20._ICS_8___
AA______CC__GGGT____AA______
21._CRU_104___
______AGCCAAGGGT____AATT____
22._CRU_111___
______AGCCAAGGGT____AATT____
23._PA_81_[PER]___
AA______CC__GGGT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAACCGGAGAGCTCCGGGGTTTTCTTT
1._ICS_8___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
2._ICS_8___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
3._ICS_8___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
4._ICS_8___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
5._ICS_8___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
6._NA_95___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
7._ICS_8___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
8._ICS_8___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
9._NA_95___
TTAACCGGAGAGCTCCGGGGTTTTCTTT
10._ICS_8___
____CC__________________CTTT
11._ICS_8___
____CC__________________CTTT
12._ICS_8___
____CC__________________CTTT
13._ICS_8___
____CC__________________CTTT
14._ICS_8___
____CC__________________CTTT
15._ICS_8___
____CC__________________CTTT
16._ICS_8___
____CC__________________CTTT
17._NA_95___
____CC__________________CTTT
18._NA_95___
____CC__________________CTTT
19._ICS_8___
____CC__________________CTTT
20._ICS_8___
____CC__________________CTTT
21._CRU_104___
TTAA____AG____________CTCT__
22._CRU_111___
TTAA____AG____________CTCT__
23._PA_81_[PER]___
____CC__________________CTTT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAGCCTTCCACGGGGACAGTTGGGGTT
1._ICS_8___
GTAGCCTTCCACGGGGACAGTTGGGGTT
2._ICS_8___
GTAGCCTTCCACGGGGACAGTTGGGGTT
3._ICS_8___
GTAGCCTTCCACGGGGACAGTTGGGGTT
4._ICS_8___
GTAGCCTTCCACGGGGACAGTTGGGGTT
5._ICS_8___
GTAGCCTTCCACGGGGACAGTTGGGGTT
6._NA_95___
GTAGCCTTCCACGGGGACAGTTGGGGTT
7._ICS_8___
GTAGCCTTCCACGGGGACAGTTGGGGTT
8._ICS_8___
GTAGCCTTCCACGGGGACAGTTGGGGTT
9._NA_95___
GTAGCCTTCCACGGGGACAGTTGGGGTT
10._ICS_8___
____CC__CCACGG__ACAGTTGG____
11._ICS_8___
____CC__CCACGG__ACAGTTGG____
12._ICS_8___
____CC__CCACGG__ACAGTTGG____
13._ICS_8___
____CC__CCACGG__ACAGTTGG____
14._ICS_8___
____CC__CCACGG__ACAGTTGG____
15._ICS_8___
____CC__CCACGG__ACAGTTGG____
16._ICS_8___
____CC__CCACGG__ACAGTTGG____
17._NA_95___
____CC__CCACGG__ACAGTTGG____
18._NA_95___
____CC__CCACGG__ACAGTTGG____
19._ICS_8___
____CC__CCACGG__ACAGTTGG____
20._ICS_8___
________CCACGG__ACAGTTGG____
21._CRU_104___
GT__CCTTCCAC__GGACAGTTGGGG__
22._CRU_111___
GT__CCTTCCAC__GGACAGTTGGGG__
23._PA_81_[PER]___
________CCACGG__ACAGTT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTAAAAACAAAACCGGCCAAAATT
1._ICS_8___
CCGGTTAAAAACAAAACCGGCCAAAATT
2._ICS_8___
CCGGTTAAAAACAAAACCGGCCAAAATT
3._ICS_8___
CCGGTTAAAAACAAAACCGGCCAAAATT
4._ICS_8___
CCGGTTAAAAACAAAACCGGCCAAAATT
5._ICS_8___
CCGGTTAAAAACAAAACCGGCCAAAATT
6._NA_95___
CCGGTTAAAAACAAAACCGGCCAAAATT
7._ICS_8___
CCGGTTAAAAACAAAACCGGCCAAAATT
8._ICS_8___
CCGGTTAAAAACAAAACCGGCCAAAATT
9._NA_95___
CCGGTTAAAAACAAAACCGGCCAAAATT
10._ICS_8___
__GGTT__________CCGG______TT
11._ICS_8___
__GGTT__________CCGG______TT
12._ICS_8___
__GGTT__________CCGG______TT
13._ICS_8___
__GGTT__________CCGG______TT
14._ICS_8___
__GGTT__________CCGG______TT
15._ICS_8___
__GGTT__________CCGG______TT
16._ICS_8___
__GGTT__________CCGG______TT
17._NA_95___
__GGTT__________CCGG______TT
18._NA_95___
__GGTT__________CCGG______TT
19._ICS_8___
__GGTT__________CCGG______TT
20._ICS_8___
__GGTT__________ACGG______TT
21._CRU_104___
________________CCGG____AATT
22._CRU_111___
________________CCGG____AATT
23._PA_81_[PER]___
__GGTT__________CCGG______TT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
1._ICS_8___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
2._ICS_8___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
3._ICS_8___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
4._ICS_8___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
5._ICS_8___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
6._NA_95___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
7._ICS_8___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
8._ICS_8___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
9._NA_95___
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
10._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
11._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
12._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
13._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
14._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
15._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
16._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
17._NA_95___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
18._NA_95___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
19._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
20._ICS_8___
CTTT__AA__CCTTTT____X_XX_XX_XX_X
21._CRU_104___
______AATTCCTT______X_XX_XX_XX_X
22._CRU_111___
______AATTCCTT______X_XX_XX_XX_X
23._PA_81_[PER]___
CTTT__AA__CCTTTT____X_XX_XX_XX_X

Input profile: ICS_8 GC-08-054-1-65

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._ICS_8 GC-08-054-1-65

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._ICS_8 GC-08-054-1-65

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._ICS_8 GC-08-054-1-65

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._ICS_8 GC-08-054-1-65

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._ICS_8 GC-08-054-1-65

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._NA_95 GC-01-122-6-19

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

7._ICS_8 GC-08-054-1-65

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._ICS_8 GC-08-054-1-65

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._NA_95 GC-08-168-4-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 3 > FP
 Dapeng Zhang, 2016

11._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 2 > FP
 Dapeng Zhang, 2016

12._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 10
 Dapeng Zhang, 2016

13._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 9
 Dapeng Zhang, 2016

14._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 8
 Dapeng Zhang, 2016

15._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 7
 Dapeng Zhang, 2016

16._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 6
 Dapeng Zhang, 2016

17._NA_95

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

18._NA_95

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

19._ICS_8

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 1 > FP
 Dapeng Zhang, 2016

20._ICS_8

97.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block5
 Dapeng Zhang, 2016

21._CRU_104 RUQ_1585

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._CRU_111 RUQ_1460

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._PA_81_[PER]

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A F527 T2
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240