SNP Profiles matching EET 233 [ECU]

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_Input profile	CT	GG	CC	CT	CC	CC	CT	GG	TT	CC	TT	GG	CT	AG
1._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
2._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
3._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
4._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
5._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
6._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
7._GC-05-085-2-36	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
8._GC-05-085-2-36	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
9._GC-05-149-4-02	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
10._GC-05-178-4-31	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
11._GC-05-178-4-31	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
12._GC-05-178-4-31	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
13._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
14._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
15._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
16._EET_233_[ECU]	CT	GG	CC	CT	CC	_	CT	_	TT	CC	TT	GG	CC	AG
17._GC-05-085-2-36	CT	GG	CC	CT	CC	_	CT	_	TT	CC	TT	GG	CC	AG
18._GC-05-085-2-36	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
19._GC-05-085-2-36	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
20._GC-05-149-4-02	CT	GG	CC	CT	CC	_	CT	GG	TT	CC	TT	GG	CC	AG
21._RUQ_1517	_	GG	CC	CT	_	_	_	GG	_	_	_	_	CC	AG
22._RUQ_1438	_	GG	CG	CT	_	_	_	GT	_	_	_	_	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
1._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
2._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
3._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
4._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
5._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
6._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
7._GC-05-085-2-36	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
8._GC-05-085-2-36	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
9._GC-05-149-4-02	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
10._GC-05-178-4-31	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
11._GC-05-178-4-31	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
12._GC-05-178-4-31	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
13._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
14._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
15._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
16._EET_233_[ECU]	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
17._GC-05-085-2-36	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
18._GC-05-085-2-36	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
19._GC-05-085-2-36	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
20._GC-05-149-4-02	TT	AT	GG	CC	TT	GG	GG	AA	CT	CC	CG	GT	CT	AC
21._RUQ_1517	_	_	_	_	TT	GG	GG	_	CT	CC	GG	GT	CT	AC
22._RUQ_1438	_	_	_	_	TT	GG	GG	_	CT	CC	CG	GT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
1._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
2._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
3._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
4._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
5._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
6._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
7._GC-05-085-2-36	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
8._GC-05-085-2-36	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
9._GC-05-149-4-02	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
10._GC-05-178-4-31	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
11._GC-05-178-4-31	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
12._GC-05-178-4-31	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
13._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	_	CC	X_X	X_X
14._EET_233_[ECU]	AG	AG	TT	CC	_	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
15._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	_	AA	CC	X_X	X_X
16._EET_233_[ECU]	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
17._GC-05-085-2-36	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
18._GC-05-085-2-36	AG	AG	TT	CC	AA	CC	CC	CT	GT	_	AA	CC	X_X	X_X
19._GC-05-085-2-36	AG	AG	TT	CC	_	CC	CC	CT	GT	CC	AA	CC	X_X	X_X
20._GC-05-149-4-02	AG	AG	TT	CC	AA	CC	CC	CT	GT	CC	_	CC	X_X	X_X
21._RUQ_1517	AG	_	TT	CC	AA	CC	CC	CT	GT	CC	_	_	X_X	X_X
22._RUQ_1438	AG	_	TT	CC	AA	CC	CC	TT	GT	CC	_	_	X_X	X_X

Input profile: EET_233_[ECU] RUQ_1517

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._EET_233_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 3 > FP

Dapeng Zhang, 2016

2._EET_233_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 5

Dapeng Zhang, 2016

3._EET_233_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 4

Dapeng Zhang, 2016

4._EET_233_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5402 1 > FP

Dapeng Zhang, 2016

5._EET_233_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 4

Dapeng Zhang, 2016

6._EET_233_[ECU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 2 > FP

Dapeng Zhang, 2016

7._EET_233_[ECU] GC-05-085-2-36

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL2

Notes: PL2 FP2

8._EET_233_[ECU] GC-05-085-2-36

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._EET_233_[ECU] GC-05-149-4-02

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP2

10._EET_233_[ECU] GC-05-178-4-31

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

11._EET_233_[ECU] GC-05-178-4-31

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._EET_233_[ECU] GC-05-178-4-31

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._EET_233_[ECU]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5402 2

Dapeng Zhang, 2016

14._EET_233_[ECU]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 5 > FP

Dapeng Zhang, 2016

15._EET_233_[ECU]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 3 > FP

Dapeng Zhang, 2016

16._EET_233_[ECU]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._EET_233_[ECU] GC-05-085-2-36

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL1

Notes: PL1 FP1

18._EET_233_[ECU] GC-05-085-2-36

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL3

Notes: PL3 FP3

19._EET_233_[ECU] GC-05-085-2-36

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL5

Notes: PL5 FP4

20._EET_233_[ECU] GC-05-149-4-02

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

21._EET_233_[ECU] RUQ_1517

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

22._SJ_1_/40_[POU] RUQ_1438

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25