SNP Profiles matching Amazon15 15

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
1._AMAZ_15_/15	CC	AA	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
2._AMAZ_15_/15	CC	AA	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
3._AMAZ_15_/15	CC	AA	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
4._AMAZ_15_/15	CC	AA	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
5._GC-01-028-2-05	CC	AA	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
6._GC-01-028-2-05	CC	AA	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
7._GC-01-028-2-05	CC	AA	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
8._RUQ_1	CC	AG	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	TT	AA
9._RUQ_1	_	AA	GG	TT	_	_	_	GT	_	_	_	_	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	CC	TT	CG	TT	GG	CT	AA	GG	GG	CC	AC
1._AMAZ_15_/15	CC	AA	GG	CC	TT	CG	TT	GG	CT	AA	GG	GG	CC	AC
2._AMAZ_15_/15	CC	AA	GG	CC	TT	CG	TT	AA	CT	AA	GG	GG	CC	AC
3._AMAZ_15_/15	CC	AA	GG	CC	TT	CG	TT	AA	CT	AA	GG	GG	CC	AC
4._AMAZ_15_/15	CC	AA	GG	CC	TT	CG	TT	AA	CT	AA	GG	GG	CC	AC
5._GC-01-028-2-05	CC	AA	GG	CC	TT	CG	TT	AA	CT	AA	GG	GG	CC	AC
6._GC-01-028-2-05	CC	AA	GG	CC	TT	CG	TT	AA	CT	AA	GG	GG	CC	AC
7._GC-01-028-2-05	CC	AA	GG	CC	TT	CG	TT	AA	CT	AA	GG	GG	CC	AC
8._RUQ_1	CC	AA	GG	CC	TT	CG	TT	GG	CT	AA	GG	GG	CC	AC
9._RUQ_1	_	_	_	_	TT	CG	TT	_	CT	AA	CG	GG	CC	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
1._AMAZ_15_/15	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
2._AMAZ_15_/15	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
3._AMAZ_15_/15	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
4._AMAZ_15_/15	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
5._GC-01-028-2-05	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
6._GC-01-028-2-05	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
7._GC-01-028-2-05	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
8._RUQ_1	AG	GG	AA	CT	AA	CC	AC	CC	GT	AC	TT	CG	X_X	X_X
9._RUQ_1	AG	_	AA	CT	AA	CC	AC	CC	GT	CC	_	_	X_X	X_X

Input profile: AMAZ_15_/15

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Malaysian Cocoa Board (MCB), Malaysia

Location: Trial 1/Rep 1 Trial 1/Rep 1 50

Dapeng Zhang, 2016

1._AMAZ_15_/15

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A101 T1

Dapeng Zhang, 2016

2._AMAZ_15_/15

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1205 1 > FP

Dapeng Zhang, 2016

3._AMAZ_15_/15

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1205 16

Dapeng Zhang, 2016

4._AMAZ_15_/15

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1205 9

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

5._AMAZ_15_/15 GC-01-028-2-05

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

6._AMAZ_15_/15 GC-01-028-2-05

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

Mars, 2018

7._AMAZ_15_/15 GC-01-028-2-05

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

Mars, 2018

8._AMAZ_15_/15 RUQ_1

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._AMAZ_15_/15 RUQ_1

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25

SNP Profiles matching Amazon15 15

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Input profile: AMAZ_15_/15

1._AMAZ_15_/15

identical 40 shared markers

2._AMAZ_15_/15

97.5 % 40 shared markers

3._AMAZ_15_/15

97.5 % 40 shared markers

4._AMAZ_15_/15

97.5 % 40 shared markers

5._AMAZ_15_/15 GC-01-028-2-05

97.5 % 40 shared markers

6._AMAZ_15_/15 GC-01-028-2-05

97.5 % 40 shared markers

7._AMAZ_15_/15 GC-01-028-2-05

97.5 % 40 shared markers

8._AMAZ_15_/15 RUQ_1

97.5 % 40 shared markers

9._AMAZ_15_/15 RUQ_1

95.8 % 24 shared markers

identical
40 shared markers

97.5 %
40 shared markers

97.5 %
40 shared markers

97.5 %
40 shared markers

97.5 %
40 shared markers

97.5 %
40 shared markers

97.5 %
40 shared markers

97.5 %
40 shared markers

95.8 %
24 shared markers