SNP Profiles matching UF 667

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTAACCAGCCAAGGAGAACC
1._PA_121_[PER]___
____ACGTCCAACCAACCAA__AGAACT
2._PA_137_[PER]___
____ACGTCTACCCAGCCAA__AGACCT
3._PA_289_[PER]___
____ACGTCTAACCGGCCAA__AAAACT
4._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
5._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
6._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
7._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
8._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
9._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
10._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
11._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
12._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
13._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
14._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
15._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
16._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
17._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
18._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
19._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
20._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
21._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
22._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
23._PA_137_[PER]___
GGATACGTCTAACCAGCCAAGGAGACCT
24._PA_137_[PER]___
GGATACGTCTACCCAGCCAAGGAGACCT
25._PA_137_[PER]___
GGATACGTCTACCCAGCCAAGGAGACCT
26._PA_291_[PER]___
GGATACGGCTAACCGGCCAAGGAGAACC
27._PA_137_[PER]___
GGATACGTCTAC__AGCCAAGGAGACCT
28._PA_137_[PER]___
GGATACGTCTAC__AGCCAAGGAGACCT
29._PA_137_[PER]___
GGATACGTCTAC__AGCCAAGGAGACCT
30._PA_137_[PER]___
GGATACGTCTACCCAGCCAAGGAGACCT
31._PA_137_[PER]___
GGATACGTCTACCCAGCCAAGGAGACCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCGCCTTAAGGGGCCCTCGAACCAGCC
1._PA_121_[PER]___
GGCGCCTT__GGGGCC________AGCC
2._PA_137_[PER]___
GGCGCCTT__GGGGCC________AGCC
3._PA_289_[PER]___
GGCGCCTT__GGGGCC________AGCC
4._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
5._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
6._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
7._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
8._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
9._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
10._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
11._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
12._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
13._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
14._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
15._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
16._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
17._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
18._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
19._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
20._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
21._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
22._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
23._PA_137_[PER]___
GGCGCCTTAGGGGGCCCTCGAACTAGCC
24._PA_137_[PER]___
GGCGCCTTAAGGGGCCCTCGAACTAGCC
25._PA_137_[PER]___
GGCGCCTTAAGGGGCCCTCGAACTAGCC
26._PA_291_[PER]___
GGGGCCTTAA__GGCCCTGGAACTGGCC
27._PA_137_[PER]___
GGCGCCTTAA__GGCCCTCGAACTAGCC
28._PA_137_[PER]___
GGCGCCTTAAGGGGCCCTCGAACTAGCC
29._PA_137_[PER]___
GGCGCCTTAAGGGGCCCTCGAACTAGCC
30._PA_137_[PER]___
GGCGCCCTAAGGGGCCCTCGAACTAGCC
31._PA_137_[PER]___
GGCGCCCTAAGGGGCCCTCGAACTAGCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCCTTTTCCTTCTCGGGCCX_XX_X
1._PA_121_[PER]___
________TT______CTGGGG__X_XX_X
2._PA_137_[PER]___
________TT______CTCCGG__X_XX_X
3._PA_289_[PER]___
________TT______CTGGGG__X_XX_X
4._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
5._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
6._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
7._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
8._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
9._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
10._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
11._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
12._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
13._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
14._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
15._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
16._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
17._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
18._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
19._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
20._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
21._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
22._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
23._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
24._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
25._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
26._PA_291_[PER]___
GGAACCCCTTCTCCTTCTCGGGCCX_XX_X
27._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
28._PA_137_[PER]___
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
29._PA_137_[PER]___
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
30._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
31._PA_137_[PER]___
GGAACCCCTTCTACTTCTCCGGCCX_XX_X

Input profile: UF_667

 
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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

1._PA_121_[PER] RUQ_1059

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER] RUQ_1081

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_289_[PER] RUQ_952

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

5._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

6._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

7._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

8._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

9._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

10._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

11._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

12._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

14._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

17._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

20._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._PA_137_[PER] RUQ_1081

91.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._PA_137_[PER]

91.3 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

26._PA_291_[PER]

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2014

27._PA_137_[PER]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

28._PA_137_[PER]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

29._PA_137_[PER]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

30._PA_137_[PER] RUQ_1081

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_137_[PER] RUQ_36

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520