SNP Profiles matching TSH 516

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATACGGACCGAACTAAAGAGACCTGT
1._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
2._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
3._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
4._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
5._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
6._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
7._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
8._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
9._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
10._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
11._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
12._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
13._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
14._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
15._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
16._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
17._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
18._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
19._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
20._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
21._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
22._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
23._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
24._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
25._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
26._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
27._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
28._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
29._TSH_516___
____ACGGACCGAACTAA__AGACCTGT
30._EET_45_[ECU]___
CGATACGTACCCAACCAAAGAGACCTGT
31._EET_45_[ECU]___
CGATACGTACCCAACCAAAGAGACCTGT
32._VB_/REGINA___
CGATACGTACCCAACCAAAGAGACCTGT
33._VB_/REGINA___
CGATACGTACCCAACCAAAGAGACCTGT
34._VB_/REGINA___
CGATACGTACCCAACCAAAGAGACCTGT
35._ICS_70___
CGAAAAGTACCGAGCTAAAGAGACCTGT
36._MO_9___
CGATAAGGACCGAGCTATAGAGACCTGT
37._MO_9___
CGATAAGGACCGAGCTATAGAGACCTGT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGTTGTCGCTCGATCTAGCTAGATCTCT
1._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
2._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
3._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
4._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
5._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
6._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
7._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
8._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
9._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
10._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
11._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
12._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
13._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
14._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
15._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
16._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
17._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
18._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
19._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
20._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
21._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
22._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
23._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
24._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
25._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
26._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
27._TSH_516___
CG__GTCGCTCGATCTAGCTAGATCTCT
28._TSH_516___
CG__GTCGCTCGATCTAGCTAGATCTCT
29._TSH_516___
GGTTGTCG________AGCT________
30._EET_45_[ECU]___
GGTTGGCGCTCGATCTAGCTAGATCTCT
31._EET_45_[ECU]___
GGTTGGCGCTCGATCTAGCTAGATCTCT
32._VB_/REGINA___
GGTTGGCGCTCGATCTAGCTAGATCTCT
33._VB_/REGINA___
GGTTGGCGCTCGATCTAGCTAGATCTCT
34._VB_/REGINA___
GGTTGGCGCTCGATCTAGCTAGATCTCT
35._ICS_70___
CGTTGGCCCTCGATCTAGCTAGATCTCT
36._MO_9___
CGTTGTCCCTCGATCTAGCTAG__CTCT
37._MO_9___
CGTTGTCCCTCGATCTAGCTAG__CTCT
 29 30 31 32 33 34 35 36       
_Input profile
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
1._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
2._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
3._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
4._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
5._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
6._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
7._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
8._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
9._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
10._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
11._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
12._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
13._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
14._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
15._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
16._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
17._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
18._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
19._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
20._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
21._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
22._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
23._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
24._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
25._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
26._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
27._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
28._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
29._TSH_516___
GT______CTCGAG__X_XX_XX_XX_XX_XX_X
30._EET_45_[ECU]___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
31._EET_45_[ECU]___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
32._VB_/REGINA___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
33._VB_/REGINA___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
34._VB_/REGINA___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
35._ICS_70___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
36._MO_9___
GTCCACCTTTCGAACTX_XX_XX_XX_XX_XX_X
37._MO_9___
GTCCACCTTTCGAACTX_XX_XX_XX_XX_XX_X

Input profile: TSH_516

 
Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

1._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016

2._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

3._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

4._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

5._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

6._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

7._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

8._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

9._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

10._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

11._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

12._TSH_516

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

13._TSH_516 GC-08-208-6-04

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._TSH_516 GC-08-208-6-04

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._TSH_516 GC-08-208-6-04

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

16._TSH_516 GC-08-208-6-04

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._TSH_516 GC-08-208-6-04

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._TSH_516 GC-08-208-6-04

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._TSH_516 GC-08-209-6-05

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._TSH_516 GC-08-209-6-05

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._TSH_516 GC-08-209-6-05

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._TSH_516 GC-08-209-6-05

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._TSH_516 GC-08-209-6-05

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._TSH_516 GC-08-209-6-05

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._TSH_516 GC-08-209-6-05

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._TSH_516 RUQ_1018

identical
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._TSH_516

identical
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

28._TSH_516 GC-08-208-6-04

identical
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._TSH_516 RUQ_1018

97.6 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._EET_45_[ECU]

93.1 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

31._EET_45_[ECU] GC-03-017-2-06

93.1 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

32._VB_/REGINA GC-01-002-1-02

93.1 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

33._VB_/REGINA GC-01-002-1-02

93.1 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

34._VB_/REGINA GC-01-002-1-02

93.1 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

35._ICS_70 RUQ_321

91.7 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

36._MO_9

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

37._MO_9 GC-05-071-2-22

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP193
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP619 17TcSNP723 18TcSNP872 19TcSNP917 20TcSNP929
21TcSNP953 22TcSNP994 23TcSNP998 24TcSNP1060 25TcSNP1062
26TcSNP1075 27TcSNP1144 28TcSNP1165 29TcSNP1253 30TcSNP1270
31TcSNP1350 32TcSNP1414 33TcSNP1442 34TcSNP1458 35TcSNP1484
36TcSNP1520