SNP Profiles matching PA 88 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
1._EQX_/Z_[CHA]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
2._EQX_/Z_[CHA]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
3._EQX_/Z_[CHA]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
4._EQX_/Z_[CHA]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
5._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
6._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
7._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
8._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
9._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
10._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
11._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
12._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
13._PA_8_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
14._PA_8_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
15._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
16._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
17._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
18._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
19._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
20._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
21._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
22._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
23._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
24._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
25._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
26._PA_8_[PER]___
GGCGCT__CCCCTTCCCCAAGGCCAGCT
27._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
28._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
29._PA_88_[PER]___
GGCGCT______TT________CCAG__
30._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
31._PA_88_[PER]___
GGCGCTTTCCCCTTCCCCAAGGCCAGCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACGTTCCGGGGAGCTACCGGTCTAAAA
1._EQX_/Z_[CHA]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
2._EQX_/Z_[CHA]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
3._EQX_/Z_[CHA]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
4._EQX_/Z_[CHA]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
5._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
6._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
7._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
8._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
9._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
10._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
11._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
12._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
13._PA_8_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
14._PA_8_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
15._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
16._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
17._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
18._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
19._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
20._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
21._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
22._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
23._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
24._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAA__
25._PA_88_[PER]___
AACG__CCGGGGAGCTACCGGTCTAAAA
26._PA_8_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAAAA
27._PA_88_[PER]___
AACG__CCGGGGAGCTACCGGTCTAAAA
28._PA_88_[PER]___
AACGTTCCGGGGAGCTACCGGTCTAA__
29._PA_88_[PER]___
______CCGGGG__CTACCGGTCTAAAA
30._PA_88_[PER]___
AACGTTCCGGGGAACTACCGGTCTAAAA
31._PA_88_[PER]___
AACGTTCCGGGGAACTACCGGTCTAAAA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
1._EQX_/Z_[CHA]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
2._EQX_/Z_[CHA]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
3._EQX_/Z_[CHA]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
4._EQX_/Z_[CHA]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
5._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
6._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
7._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
8._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
9._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
10._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
11._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
12._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
13._PA_8_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
14._PA_8_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
15._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
16._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
17._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
18._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
19._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
20._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
21._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
22._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
23._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
24._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
25._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
26._PA_8_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
27._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
28._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
29._PA_88_[PER]___
__AACCGGCCAACTGGAC____X_XX_XX_X
30._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
31._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X

Input profile: PA_88_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 1313 1 > FP
 Dapeng Zhang, 2016

1._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

2._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

3._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 2
 Dapeng Zhang, 2016

6._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 3
 Dapeng Zhang, 2016

7._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 5
 Dapeng Zhang, 2016

8._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 8
 Dapeng Zhang, 2016

9._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 10
 Dapeng Zhang, 2016

10._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 11
 Dapeng Zhang, 2016

11._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 16 > F
 Dapeng Zhang, 2016

12._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 6 > FP
 Dapeng Zhang, 2016

13._PA_8_[PER] GC-01-037-2-14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_8_[PER] GC-01-037-2-14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

20._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

24._PA_88_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 14
 Dapeng Zhang, 2016

25._PA_88_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 4 > FP
 Dapeng Zhang, 2016

26._PA_8_[PER] GC-01-037-2-14

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

27._PA_88_[PER] GC-01-058-3-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

28._PA_88_[PER] GC-01-058-3-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

29._PA_88_[PER] RUQ_34

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_88_[PER] RUQ_34

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_88_[PER]

98.7 %
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P50 299
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25