SNP Profiles matching PA 88 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
1._EQX_/Z_[CHA]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
2._EQX_/Z_[CHA]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
3._EQX_/Z_[CHA]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
4._EQX_/Z_[CHA]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
5._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
6._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
7._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
8._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
9._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
10._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
11._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
12._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
13._PA_8_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
14._PA_8_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
15._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
16._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
17._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
18._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
19._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
20._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
21._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
22._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
23._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
24._PA_88_[PER]___
__GGCGCTTTCCCCTTCCCCAAGGCCAG
25._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
26._PA_8_[PER]___
CCGGCGCT__CCCCTTCCCCAAGGCCAG
27._PA_88_[PER]___
__GGCGCTTTCCCCTTCCCCAAGGCCAG
28._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
29._PA_88_[PER]___
__GGCGCT______TT________CCAG
30._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
31._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGTTCCGGGGAGCTACCGGTCTAA
1._EQX_/Z_[CHA]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
2._EQX_/Z_[CHA]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
3._EQX_/Z_[CHA]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
4._EQX_/Z_[CHA]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
5._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
6._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
7._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
8._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
9._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
10._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
11._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
12._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
13._PA_8_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
14._PA_8_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
15._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
16._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
17._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
18._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
19._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
20._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
21._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
22._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
23._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
24._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
25._PA_88_[PER]___
CTAACG__CCGGGGAGCTACCGGTCTAA
26._PA_8_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
27._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
28._PA_88_[PER]___
CTAACG__CCGGGGAGCTACCGGTCTAA
29._PA_88_[PER]___
________CCGGGG__CTACCGGTCTAA
30._PA_88_[PER]___
CTAACGTTCCGGGGAACTACCGGTCTAA
31._PA_88_[PER]___
CTAACGTTCCGGGGAACTACCGGTCTAA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
1._EQX_/Z_[CHA]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
2._EQX_/Z_[CHA]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
3._EQX_/Z_[CHA]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
4._EQX_/Z_[CHA]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
5._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
6._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
7._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
8._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
9._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
10._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
11._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
12._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
13._PA_8_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
14._PA_8_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
15._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
16._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
17._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
18._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
19._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
20._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
21._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
22._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
23._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
24._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
25._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
26._PA_8_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
27._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
28._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
29._PA_88_[PER]___
__AACCGGCCAACTGGAC____X_XX_XX_X
30._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X
31._PA_88_[PER]___
GGAACCGGCCAACTGGACAAGGX_XX_XX_X

Input profile: PA_88_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 1313 14
 Dapeng Zhang, 2016

1._EQX_/Z_[CHA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

2._EQX_/Z_[CHA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

3._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 2
 Dapeng Zhang, 2016

6._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 3
 Dapeng Zhang, 2016

7._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 5
 Dapeng Zhang, 2016

8._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 8
 Dapeng Zhang, 2016

9._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 10
 Dapeng Zhang, 2016

10._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 11
 Dapeng Zhang, 2016

11._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 16 > F
 Dapeng Zhang, 2016

12._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 6 > FP
 Dapeng Zhang, 2016

13._PA_8_[PER] GC-01-037-2-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_8_[PER] GC-01-037-2-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

19._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

22._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

23._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

24._PA_88_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 1 > FP
 Dapeng Zhang, 2016

25._PA_88_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 4 > FP
 Dapeng Zhang, 2016

26._PA_8_[PER] GC-01-037-2-14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

27._PA_88_[PER] GC-01-058-3-13

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

28._PA_88_[PER] GC-01-058-3-13

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._PA_88_[PER] RUQ_34

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_88_[PER] RUQ_34

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_88_[PER]

98.7 %
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P50 299
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25