SNP Profiles matching PA 88 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
1._EQX_/Z_[CHA]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
2._EQX_/Z_[CHA]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
3._EQX_/Z_[CHA]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
4._EQX_/Z_[CHA]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
5._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
6._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
7._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
8._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
9._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
10._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
11._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
12._PA_8_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
13._PA_8_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
14._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
15._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
16._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
17._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
18._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
19._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
20._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
21._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
22._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
23._PA_88_[PER]___
__GGCGCTTTCCCCTTCCCCAAGGCCAG
24._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
25._PA_8_[PER]___
CCGGCGCT__CCCCTTCCCCAAGGCCAG
26._PA_88_[PER]___
__GGCGCTTTCCCCTTCCCCAAGGCCAG
27._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
28._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
29._PA_88_[PER]___
__GGCGCT______TT________CCAG
30._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
31._PA_88_[PER]___
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGTTCCGGGGAGCTACCGGTCTAA
1._EQX_/Z_[CHA]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
2._EQX_/Z_[CHA]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
3._EQX_/Z_[CHA]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
4._EQX_/Z_[CHA]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
5._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
6._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
7._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
8._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
9._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
10._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
11._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
12._PA_8_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
13._PA_8_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
14._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
15._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
16._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
17._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
18._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
19._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
20._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
21._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
22._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
23._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
24._PA_88_[PER]___
CTAACG__CCGGGGAGCTACCGGTCTAA
25._PA_8_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
26._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
27._PA_88_[PER]___
CTAACG__CCGGGGAGCTACCGGTCTAA
28._PA_88_[PER]___
CTAACGTTCCGGGGAGCTACCGGTCTAA
29._PA_88_[PER]___
________CCGGGG__CTACCGGTCTAA
30._PA_88_[PER]___
CTAACGTTCCGGGGAACTACCGGTCTAA
31._PA_88_[PER]___
CTAACGTTCCGGGGAACTACCGGTCTAA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCGGCCAACTGGACAAGGX_XX_X
1._EQX_/Z_[CHA]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
2._EQX_/Z_[CHA]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
3._EQX_/Z_[CHA]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
4._EQX_/Z_[CHA]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
5._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
6._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
7._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
8._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
9._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
10._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
11._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
12._PA_8_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
13._PA_8_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
14._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
15._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
16._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
17._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
18._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
19._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
20._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
21._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
22._PA_88_[PER]___
__GGAACCGGCCAACTGGACAAGGX_XX_X
23._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
24._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
25._PA_8_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
26._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
27._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
28._PA_88_[PER]___
__GGAACCGGCCAACTGGACAAGGX_XX_X
29._PA_88_[PER]___
AA__AACCGGCCAACTGGAC____X_XX_X
30._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X
31._PA_88_[PER]___
AAGGAACCGGCCAACTGGACAAGGX_XX_X

Input profile: PA_88_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 1313 5
 Dapeng Zhang, 2016

1._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

2._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

3._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._PA_88_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 2
 Dapeng Zhang, 2016

6._PA_88_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 3
 Dapeng Zhang, 2016

7._PA_88_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 8
 Dapeng Zhang, 2016

8._PA_88_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 10
 Dapeng Zhang, 2016

9._PA_88_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 11
 Dapeng Zhang, 2016

10._PA_88_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 16 > F
 Dapeng Zhang, 2016

11._PA_88_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 6 > FP
 Dapeng Zhang, 2016

12._PA_8_[PER] GC-01-037-2-14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._PA_8_[PER] GC-01-037-2-14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

18._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

22._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 14
 Dapeng Zhang, 2016

23._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 1 > FP
 Dapeng Zhang, 2016

24._PA_88_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1313 4 > FP
 Dapeng Zhang, 2016

25._PA_8_[PER] GC-01-037-2-14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

26._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

27._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

28._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

29._PA_88_[PER] RUQ_34

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_88_[PER] RUQ_34

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_88_[PER]

98.8 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P50 299
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25