SNP Profiles matching MA 12 [BRA]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAGGCCTTCCTTTTCCAAAACTAACTAA
1._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
2._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
3._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
4._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
5._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
6._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
7._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
8._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
9._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
10._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
11._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
12._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
13._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
14._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
15._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
16._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
17._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
18._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
19._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
20._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
21._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
22._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
23._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
24._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
25._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
26._MA_12_[BRA]___
AAGGCC______TT______CTAA____
27._MA_12_[BRA]___
AGGGCCTTCCTTTTCCAAAACTAACTAA
28._MA_15_[BRA]___
AAGGCCTTAATTTTCCAAAGCTAACTAA
29._MA_15_[BRA]___
AAGGCCTTAATTTTCCAAAGCTAACTAA
30._MA_15_[BRA]___
AAGGCCTTAATTTTCCAAAGCTAACTAA
31._MA_15_[BRA]___
AAGGCCTTAATTTTCCAAAGCTAACTAA
32._MA_15_[BRA]___
AAGGCCTTAATTTTCCAAAGCTAACTAA
33._MA_15_[BRA]___
AAGGCCTTAATTTTCCAAAGCTAACTAA
34._MA_15_[BRA]___
AAGGCCTTAATTTTCCAAAGCTAACTAA
35._MA_15_[BRA]___
AAGGCCTTAATTTTCCAAAGCTAACTAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCCGGTAACCAACCTTCCCCAAGG
1._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
2._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
3._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
4._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
5._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
6._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
7._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
8._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
9._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
10._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
11._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
12._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
13._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
14._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
15._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
16._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
17._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
18._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
19._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
20._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
21._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
22._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
23._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
24._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
25._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
26._MA_12_[BRA]___
____CCCGGT__CCAACCTTCCCCAA__
27._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
28._MA_15_[BRA]___
GGCCCCCGGGAACCAACGTTCTCCAAGG
29._MA_15_[BRA]___
GGCCCCCGGGAACCAACGTTCTCCAAGG
30._MA_15_[BRA]___
GGCCCCCGGGAACCAACGTTCTCCAAGG
31._MA_15_[BRA]___
GGCCCCCGGGAACCAACGTTCTCCAAGG
32._MA_15_[BRA]___
GGCCCCCGGGAACCAACGTTCTCCAAGG
33._MA_15_[BRA]___
GGCCCCCGGGAACCAACGTTCTCCAAGG
34._MA_15_[BRA]___
GGCCCCCGGGAACCAACGTTCTCCAAGG
35._MA_15_[BRA]___
GGCCCCCGGGAACCAACGTTCTCCAAGG
 29 30 31 32 33 34 35 36 37      
_Input profile
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
1._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
2._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
3._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
4._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
5._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
6._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
7._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
8._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
9._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
10._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
11._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
12._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
13._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
14._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
15._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
16._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
17._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
18._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
19._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
20._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
21._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
22._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
23._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
24._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
25._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
26._MA_12_[BRA]___
AACTAGAACCTTCC____X_XX_XX_XX_XX_X
27._MA_12_[BRA]___
AACTAGAACCGTCCTTGGX_XX_XX_XX_XX_X
28._MA_15_[BRA]___
AA__AGAACCTTCCTTGGX_XX_XX_XX_XX_X
29._MA_15_[BRA]___
AA__AGAACCTTCCTTGGX_XX_XX_XX_XX_X
30._MA_15_[BRA]___
AATTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
31._MA_15_[BRA]___
AATTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
32._MA_15_[BRA]___
AATTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
33._MA_15_[BRA]___
AATTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
34._MA_15_[BRA]___
AATTAGAA__TTCCTTGGX_XX_XX_XX_XX_X
35._MA_15_[BRA]___
AATTAGAA__TTCCTTGGX_XX_XX_XX_XX_X

Input profile: MA_12_[BRA]

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 4 > FP
 Dapeng Zhang, 2016

2._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 1 > FP
 Dapeng Zhang, 2016

3._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 10
 Dapeng Zhang, 2016

4._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 7
 Dapeng Zhang, 2016

5._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 6
 Dapeng Zhang, 2016

6._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 5
 Dapeng Zhang, 2016

7._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 3
 Dapeng Zhang, 2016

8._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 2
 Dapeng Zhang, 2016

9._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7403 1 > FP
 Dapeng Zhang, 2016

10._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7403 3
 Dapeng Zhang, 2016

11._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7302 2 > FP
 Dapeng Zhang, 2016

12._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7302 1 > FP
 Dapeng Zhang, 2016

13._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

17._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

20._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._MA_12_[BRA] GC-07-047-3-02

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

22._MA_12_[BRA] GC-07-047-3-02

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

23._MA_12_[BRA] GC-07-067-4-03

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

24._MA_12_[BRA] GC-07-067-4-03

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

25._MA_12_[BRA]

identical
37 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: V3 20
 Dapeng Zhang, 2016

26._MA_12_[BRA] RUQ_124

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._MA_12_[BRA] RUQ_124

97.3 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._MA_15_[BRA]

91.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1315 5
 Dapeng Zhang, 2016

29._MA_15_[BRA] GC-01-060-3-15

91.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._MA_15_[BRA]

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1315 1 > FP
 Dapeng Zhang, 2016

31._MA_15_[BRA]

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1315 2
 Dapeng Zhang, 2016

32._MA_15_[BRA] GC-01-060-3-15

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

33._MA_15_[BRA] GC-01-060-3-15

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._MA_15_[BRA]

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1315 13
 Dapeng Zhang, 2016

35._MA_15_[BRA] GC-01-060-3-15

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP193 33TcSNP151 34TcSNP150 35TcSNP144
36TcSNP32 37TcSNP25