SNP Profiles matching ICS 8

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCTTAACCTTTTTTAAAACTGG
1._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
2._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
3._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
4._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
5._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
6._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
7._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
8._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
9._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
10._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
11._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
12._NA_95___
TTAAGGCCTTAACCTTTTTTAAAACTGG
13._NA_95___
TTAAGGCCTTAACCTTTTTTAAAACTGG
14._NA_95___
TTAAGGCCTTAACCTTTTTTAAAACTGG
15._NA_95___
TTAAGGCCTTAACCTTTTTTAAAACTGG
16._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAA__GG
17._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
18._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAA__GG
19._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
20._PA_81_[PER]___
TTAAGGCCTTAACCTTTTTTAAAACTGG
21._CRU_104___
__AAGGCC______TT________CTGG
22._CRU_111___
__AAGGCC______TT________CTGG
23._ICS_8___
TTAAGGCCTTAACCTTTTTTAAAACTGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
1._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
2._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
3._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
4._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
5._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
6._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
7._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
8._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
9._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
10._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
11._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
12._NA_95___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
13._NA_95___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
14._NA_95___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
15._NA_95___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
16._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
17._ICS_8___
CTAAGGTT__GGGGGGTTCCCCTTTTCC
18._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
19._ICS_8___
CTAAGGTT__GGGGGGTTCCCCTTTTCC
20._PA_81_[PER]___
CTAAGGTTCCGG__GGTTCCCCTTTTCC
21._CRU_104___
________CCGGGG__TTCCCCTTTTCC
22._CRU_111___
________CCGGGG__TTCCCCTTTTCC
23._ICS_8___
CTAAGGTTCCGGGGGGTTCCCCTTTTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCCACCTGTACTTGGX_XX_X
1._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
2._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
3._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
4._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
5._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
6._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
7._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
8._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
9._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
10._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
11._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
12._NA_95___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
13._NA_95___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
14._NA_95___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
15._NA_95___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
16._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
17._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
18._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
19._ICS_8___
AAGGAACCAGCCACCTGTACTTGGX_XX_X
20._PA_81_[PER]___
AAGGAACCAG__ACCTGTACTTGGX_XX_X
21._CRU_104___
AA____CCAGCCACCTGTAC____X_XX_X
22._CRU_111___
AA____CCAGCCACCTGTAC____X_XX_X
23._ICS_8___
AAAGAACCAG__ACCTGTACTTGGX_XX_X

Input profile: ICS_8

 
Mars Center for Cocoa Science, Brazil
Location: 8165 7
 Dapeng Zhang, 2016

1._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 3 > FP
 Dapeng Zhang, 2016

2._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 2 > FP
 Dapeng Zhang, 2016

3._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 9
 Dapeng Zhang, 2016

4._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 8
 Dapeng Zhang, 2016

5._ICS_8

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 6
 Dapeng Zhang, 2016

6._ICS_8 GC-08-054-1-65

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._ICS_8 GC-08-054-1-65

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

8._ICS_8 GC-08-054-1-65

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._ICS_8 GC-08-054-1-65

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

10._ICS_8 GC-08-054-1-65

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._ICS_8 GC-08-054-1-65

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

12._NA_95

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

13._NA_95

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

14._NA_95 GC-01-122-6-19

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

15._NA_95 GC-08-168-4-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 1 > FP
 Dapeng Zhang, 2016

17._ICS_8

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8165 10
 Dapeng Zhang, 2016

18._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._ICS_8 GC-08-054-1-65

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._PA_81_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A F527 T2
 Dapeng Zhang, 2014

21._CRU_104 RUQ_1585

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._CRU_111 RUQ_1460

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._ICS_8

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25