SNP Profiles matching LCT EEN 68 /S-6

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AA	CC	GG	TT	CC	AA	CC	TT	AG	GG	AA	CC	GG
1._RUQ_442	_	_	CC	GG	TT	CC	AA	CC	TT	_	GG	AA	CC	GG
2._RUQ_1469	_	_	-	GG	TT	CC	AG	CC	TT	_	GG	AA	CC	GG
3._LCT_EEN_68_/S-1	CG	AA	AC	GG	TT	CC	AG	CC	TT	AG	GG	AA	CC	GG
4._MO_20	CC	AA	CC	GG	TT	CC	AA	CC	TT	AG	GG	AA	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CT	AG	GT	CC	CC	GG	TT	TT	GG	TT	TT	AA
1._RUQ_442	GG	CC	TT	_	GT	_	CC	GG	TT	_	_	_	_	AA
2._RUQ_1469	GG	CC	CC	_	GT	_	CC	GG	TT	_	_	_	_	AA
3._LCT_EEN_68_/S-1	GG	CC	TT	AG	GG	CC	CC	GG	TT	TT	GG	TT	TT	AA
4._MO_20	GG	CC	CC	AA	GT	_	CC	_	TT	TT	GG	TT	TT	AA

	29	30	31	32	33	34	35	36	37
_Input profile	CC	GG	AT	TT	GT	CC	TT	CC	AG	X_X	X_X	X_X	X_X	X_X
1._RUQ_442	CC	_	_	_	GT	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
2._RUQ_1469	CC	_	_	_	GT	_	CT	CC	AG	X_X	X_X	X_X	X_X	X_X
3._LCT_EEN_68_/S-1	CC	GG	AT	TT	GT	CC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
4._MO_20	CC	GG	TT	CT	TT	CC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_68_/S-6

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X15 Y6

Dapeng Zhang, 2014

1._LCT_EEN_68 RUQ_442

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._TAP_3_[CHA] RUQ_1469

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LCT_EEN_68_/S-1

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D310 T3

Dapeng Zhang, 2014

4._MO_20

90 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 809

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1165	33	TcSNP1253	34	TcSNP1350	35	TcSNP1442
36	TcSNP1458	37	TcSNP1484