SNP Profiles matching MA 12 [BRA]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCTTCCGGAACCAGCTGGGGAACC
1._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
2._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
3._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
4._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
5._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
6._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
7._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
8._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
9._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
10._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
11._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
12._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
13._MA_12_[BRA]___
____CCTTCC__AACCAGCT____AA__
14._MA_12_[BRA]___
____CCTTCC__AA__AGCT____AA__
15._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
16._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
17._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
18._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
19._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
20._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
21._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
22._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
23._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
24._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
25._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
26._MA_12_[BRA]___
TTCCCCTTCCGGAACCAGCTGGGGAACC
27._MA_12_[BRA]___
____CCGTCC__AACCAGCT____AA__
28._MA_15_[BRA]___
____CCTTCC__AACCAG______AA__
29._MA_15_[BRA]___
____CCTTCC__AACCAGTT____AA__
30._MA_15_[BRA]___
____CCTTCC__AACCAGTT____AA__
31._MA_15_[BRA]___
____CCTT____AACCAGTT____AA__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCCTTCCAACCCCTTGTAGTTACCG
1._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
2._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
3._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
4._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
5._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
6._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
7._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
8._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
9._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
10._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
11._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
12._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
13._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
14._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
15._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
16._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
17._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
18._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
19._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
20._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
21._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
22._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
23._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
24._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
25._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGTAGTTACCG
26._MA_12_[BRA]___
AACCCCTTCCAACCCCCCGT__TTACCG
27._MA_12_[BRA]___
AACCCCTTCCAA__CC__GT______CG
28._MA_15_[BRA]___
AACCCTTTCGAA__CC__GG______CG
29._MA_15_[BRA]___
AACCCTTTCGAA__CC__GG______CG
30._MA_15_[BRA]___
AACCCTTTCGAA__CC__GG______CG
31._MA_15_[BRA]___
AACCCTTTCGAA__CC__GG______CG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAAAACCCTGGAGTTTTCCTTCCGG
1._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
2._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
3._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
4._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
5._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
6._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
7._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
8._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
9._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
10._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
11._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
12._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
13._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
14._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
15._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
16._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
17._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
18._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
19._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
20._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
21._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
22._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
23._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
24._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
25._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
26._MA_12_[BRA]___
CCCCAAAACTCTGGAGTTTT__TTCCGG
27._MA_12_[BRA]___
__CC__AA__CT______TT____CCGG
28._MA_15_[BRA]___
__CC__AA__CT______TT____CCGG
29._MA_15_[BRA]___
__CC__AA__CT______TT____CCGG
30._MA_15_[BRA]___
__CC__AA__CT______TT____CCGG
31._MA_15_[BRA]___
__CC__AA__CT______TT____CCGG
 43              
_Input profile
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._MA_12_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._MA_12_[BRA]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._MA_15_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._MA_15_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._MA_15_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._MA_15_[BRA]___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: MA_12_[BRA] RUQ_124

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 4 > FP
 Dapeng Zhang, 2016

2._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 1 > FP
 Dapeng Zhang, 2016

3._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 10
 Dapeng Zhang, 2016

4._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 7
 Dapeng Zhang, 2016

5._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 6
 Dapeng Zhang, 2016

6._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 5
 Dapeng Zhang, 2016

7._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 3
 Dapeng Zhang, 2016

8._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 2
 Dapeng Zhang, 2016

9._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7403 1 > FP
 Dapeng Zhang, 2016

10._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7403 3
 Dapeng Zhang, 2016

11._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7302 2 > FP
 Dapeng Zhang, 2016

12._MA_12_[BRA]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7302 1 > FP
 Dapeng Zhang, 2016

13._MA_12_[BRA]

identical
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: V3 20
 Dapeng Zhang, 2016

14._MA_12_[BRA]

identical
23 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._MA_12_[BRA] GC-08-045-1-56

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._MA_12_[BRA] GC-08-045-1-56

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._MA_12_[BRA] GC-08-045-1-56

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._MA_12_[BRA] GC-08-045-1-56

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

19._MA_12_[BRA] GC-08-045-1-56

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._MA_12_[BRA] GC-08-045-1-56

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._MA_12_[BRA] GC-08-045-1-56

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._MA_12_[BRA] GC-07-047-3-02

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

23._MA_12_[BRA] GC-07-047-3-02

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

24._MA_12_[BRA] GC-07-067-4-03

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

25._MA_12_[BRA] GC-07-067-4-03

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

26._MA_12_[BRA] GC-08-045-1-56

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._MA_12_[BRA] RUQ_124

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._MA_15_[BRA]

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1315 5
 Dapeng Zhang, 2016

29._MA_15_[BRA]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1315 1 > FP
 Dapeng Zhang, 2016

30._MA_15_[BRA]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1315 2
 Dapeng Zhang, 2016

31._MA_15_[BRA]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1315 13
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484