SNP Profiles of SPEC-160/9 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
1._GC-08-267-8-39	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
2._GC-08-267-8-39	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
3._GC-08-267-8-39	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
4._GC-08-267-8-39	AA	AA	CT	AC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
5._SPEC_160_/9	AA	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CC	_
6._SPEC_160_/9	AA	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CC	_
7._SPEC_160_/9	AA	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CC	_
8._SPEC_160_/9	AA	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CC	_
9._SPEC_160_/9	AA	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CC	_
10._RUQ_51	AA	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CC	_
11._RUQ_51	_	_	CT	AA	_	_	CT	_	CT	_	_	CT	CC	_
12._SPEC_160_/9	AA	AA	CT	AT	_	_	_	_	_	CT	GG	_	CC	_
13._RUQ_51	_	_	_	AC	_	_	CT	_	_	_	_	_	_	_
14._RUQ_51	AA	AA	_	AC	AG	AG	_	GG	AG	_	GG	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
1._GC-08-267-8-39	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
2._GC-08-267-8-39	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
3._GC-08-267-8-39	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
4._GC-08-267-8-39	AT	CC	AA	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG
5._SPEC_160_/9	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
6._SPEC_160_/9	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
7._SPEC_160_/9	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
8._SPEC_160_/9	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
9._SPEC_160_/9	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
10._RUQ_51	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
11._RUQ_51	_	_	_	_	_	CG	_	_	_	_	AG	_	AT	CG
12._SPEC_160_/9	_	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_
13._RUQ_51	_	_	_	AA	TT	_	_	_	_	_	_	_	_	_
14._RUQ_51	AT	CC	AG	AA	CC	_	GG	AG	AG	AA	AG	AT	AT	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AA	CT	GT	AG	CC	CC	AG	GT	GG	TT	GG	CC	AA
1._GC-08-267-8-39	CG	AA	CT	GT	AG	CC	CC	AG	GT	GG	TT	GG	CC	AA
2._GC-08-267-8-39	CG	AA	CT	GT	AG	CC	CC	AG	GT	GG	TT	GG	CC	AA
3._GC-08-267-8-39	CG	AA	CT	GT	AG	CC	CC	AG	GT	GG	TT	GG	CC	AA
4._GC-08-267-8-39	CG	AA	CT	GT	AG	CC	CC	AG	GT	GG	TT	GG	CC	AA
5._SPEC_160_/9	CG	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
6._SPEC_160_/9	CG	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
7._SPEC_160_/9	CG	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
8._SPEC_160_/9	CG	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
9._SPEC_160_/9	CG	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
10._RUQ_51	CG	AA	_	_	_	CC	_	AG	GT	_	_	GG	_	_
11._RUQ_51	CG	_	_	_	AG	CC	CC	AG	GT	_	_	GG	CC	_
12._SPEC_160_/9	CG	_	_	_	_	CC	_	_	GT	_	_	GG	_	_
13._RUQ_51	CG	_	_	_	_	CC	_	AG	_	_	_	_	CC	_
14._RUQ_51	CG	AA	AG	AC	AG	CC	CC	AG	AC	CC	AA	GG	GG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT	CT
1._GC-08-267-8-39	CC	GT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT	CT
2._GC-08-267-8-39	CC	GT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT	CT
3._GC-08-267-8-39	CC	GT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT	CT
4._GC-08-267-8-39	CC	GT	CC	AG	AG	AG	CT	CC	GG	GG	GT	TT	CT	CT
5._SPEC_160_/9	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
6._SPEC_160_/9	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
7._SPEC_160_/9	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
8._SPEC_160_/9	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
9._SPEC_160_/9	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
10._RUQ_51	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
11._RUQ_51	_	GT	_	_	AG	_	_	_	_	_	_	CT	CT	_
12._SPEC_160_/9	_	_	CC	_	_	_	_	_	_	_	_	_	CT	_
13._RUQ_51	_	_	_	_	AG	_	_	_	_	_	_	_	_	_
14._RUQ_51	GG	AC	GG	_	AG	AG	AG	_	GG	GG	AC	AG	AG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG	CT
1._GC-08-267-8-39	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG	CT
2._GC-08-267-8-39	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG	CT
3._GC-08-267-8-39	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG	CT
4._GC-08-267-8-39	GT	AG	CG	CT	CT	AC	GG	AG	AC	AG	GT	GT	AG	CT
5._SPEC_160_/9	_	_	CG	_	CT	AC	GG	_	AC	AG	GT	GT	_	_
6._SPEC_160_/9	_	_	CG	_	CT	AC	GG	_	AC	AG	GT	GT	_	_
7._SPEC_160_/9	_	_	CG	_	CT	AC	GG	_	AC	AG	GT	GT	_	_
8._SPEC_160_/9	_	_	CG	_	CT	AC	GG	_	AC	AG	GT	GT	_	_
9._SPEC_160_/9	_	_	CG	_	CT	AC	GG	_	AC	AG	GT	GT	_	_
10._RUQ_51	_	_	CG	_	CT	AC	GG	_	AC	AG	GT	GT	_	_
11._RUQ_51	GT	-	CG	CT	CT	AC	_	AG	AC	AG	GT	GT	AG	_
12._SPEC_160_/9	_	_	CG	_	CT	AC	GG	_	AC	AG	_	GT	_	_
13._RUQ_51	_	AG	_	_	_	_	_	_	AC	AG	_	GT	AG	_
14._RUQ_51	AC	AG	CG	AG	AG	AC	GG	AG	AC	AG	AC	AC	AG	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	TT	AC	AG	AC	AA	AA	CC	CG	CT	AT	AC	CC
1._GC-08-267-8-39	CC	GG	TT	AC	AG	AC	AA	AA	CC	CG	CT	AT	AC	CC
2._GC-08-267-8-39	CC	GG	TT	AC	AG	AC	AA	AA	CC	CG	CT	AT	AC	CC
3._GC-08-267-8-39	CC	GG	TT	AC	AG	AC	AA	AA	CC	CG	CT	AT	AC	CC
4._GC-08-267-8-39	CC	GG	TT	AC	AG	AC	AA	AA	CC	CG	CT	AT	AC	CC
5._SPEC_160_/9	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CC
6._SPEC_160_/9	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CC
7._SPEC_160_/9	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CC
8._SPEC_160_/9	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CC
9._SPEC_160_/9	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CC
10._RUQ_51	_	AG	TT	_	_	_	_	_	CC	_	_	_	_	CC
11._RUQ_51	_	_	_	_	_	_	_	_	CC	CG	_	_	AC	CC
12._SPEC_160_/9	_	AG	TT	_	_	_	_	_	CC	GG	_	_	_	CC
13._RUQ_51	_	AG	_	_	_	_	_	_	AC	CG	_	_	AC	_
14._RUQ_51	_	_	AA	AC	AG	AC	AA	_	CC	CC	AG	AT	AC	GG

	85	86	87	88	89	90	91	92	93	94
_Input profile	CC	CC	TT	GG	CT	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X
1._GC-08-267-8-39	CC	CC	TT	GG	CT	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X
2._GC-08-267-8-39	CC	CC	TT	GG	CT	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X
3._GC-08-267-8-39	CC	CC	TT	GG	CT	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X
4._GC-08-267-8-39	CC	CC	TT	GG	CT	CT	GG	TT	AT	GG	X_X	X_X	X_X	X_X
5._SPEC_160_/9	CC	CC	_	GG	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X
6._SPEC_160_/9	CC	CC	_	GG	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X
7._SPEC_160_/9	CC	CC	_	GG	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X
8._SPEC_160_/9	CC	CC	_	GG	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X
9._SPEC_160_/9	CC	CC	_	GG	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X
10._RUQ_51	CC	CC	_	GG	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X
11._RUQ_51	_	_	_	GG	CC	CT	GG	_	_	_	X_X	X_X	X_X	X_X
12._SPEC_160_/9	CC	_	_	_	_	CT	GG	TT	_	_	X_X	X_X	X_X	X_X
13._RUQ_51	_	CC	_	_	CT	_	GG	_	_	_	X_X	X_X	X_X	X_X
14._RUQ_51	GG	_	AA	_	_	AG	_	AA	AT	GG	X_X	X_X	X_X	X_X

Input profile: SPEC_160_/9 GC-08-267-8-39

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

1._SPEC_160_/9 GC-08-267-8-39

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._SPEC_160_/9 GC-08-267-8-39

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

3._SPEC_160_/9 GC-08-267-8-39

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

4._SPEC_160_/9 GC-08-267-8-39

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._SPEC_160_/9

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._SPEC_160_/9

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 2

Dapeng Zhang, 2016

7._SPEC_160_/9

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 3

Dapeng Zhang, 2016

8._SPEC_160_/9

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 4

Dapeng Zhang, 2016

9._SPEC_160_/9

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8839 5

Dapeng Zhang, 2016

10._SPEC_160_/9 RUQ_51

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._SPEC_160_/9 RUQ_51

96.3 %
41 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._SPEC_160_/9

93.9 %
33 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña, Lot 8, Row 24 4_6

Dapeng Zhang, 2016

13._SPEC_160_/9 RUQ_51

90.5 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

14._SPEC_160_/9 RUQ_51

56.3 %
80 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240