SNP Profiles of PLAYA.ALTA-2   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACGGGGCCCCCTCCGGCTCCCC
1._GC-04-017-1-17
AAAACTACGGGGCCCCCTCCGGCTCCCC
2._GC-04-017-1-17
AAAACTACGGGGCCCCCTCCGGCTCCCC
3._GC-04-017-1-17
AAAACTACGGGGCCCCCTCCGGCTCCCC
4._GC-04-017-1-17
AAAACTACGGGGCCCCCTCCGGCTCCCC
5._GC-08-173-4-16
AAAACTACGGGGCCCCCTCCGGCTCCCC
6._GC-04-017-1-17
AAAACTACGGGGCCCCCTCCGGCTCCCC
7._GC-08-173-4-16
AAAACTACGGGGCCCCCTCCGGCTCCCC
8._GC-08-173-4-16
AAAACTACGGGGCCCCCTCCGGCTCCCC
9._GC-08-173-4-16
AAAACTACGGGGCCCCCTCCGGCTCCCC
10._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
11._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
12._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
13._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
14._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
15._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
16._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
17._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
18._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
19._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
20._PLAYA_ALTA_2_[VEN]
AAAACTAC____CTCCGG_CC_
21._PLAYA_ALTA_2_[VEN]
_AACTAC____CTCCGG_CC_
22._RUQ_232
__CTAA__CT_CT__CTCC_
23._RUQ_232
___AC__CT_______
24._RUQ_232
AAAA_ACGGGG_GGAG_GGAGGGGG
25._MITC-000367
AAAA_ACGGGG_GGAG_GGAGGGGG
 1516171819202122232425262728
_Input profile
ATCCAAGGCCGGCTAATTAGTTATCCCG
1._GC-04-017-1-17
ATCCAAGGCCGGCTAATTAGTTATCCCG
2._GC-04-017-1-17
ATCCAAGGCCGGCTAATTAGTTATCCCG
3._GC-04-017-1-17
ATCCAAGGCCGGCTAATTAGTTATCCCG
4._GC-04-017-1-17
ATCCAAGGCCGGCTAATTAGTTATCCCG
5._GC-08-173-4-16
ATCCAAGGCCGGCTAATTAGTTATCCCG
6._GC-04-017-1-17
ATCCAAGGCCGGCTAATTAGTTATCCCG
7._GC-08-173-4-16
ATCCAAGGCCGGCTAATTAGTTATCCCG
8._GC-08-173-4-16
ATCCAAGGCCGGCTAATTAGTTATCCCG
9._GC-08-173-4-16
ATCCAAGGCCGGCTAATTAGTTATCCCG
10._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
11._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
12._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
13._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
14._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
15._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
16._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
17._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
18._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
19._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
20._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
21._PLAYA_ALTA_2_[VEN]
__AA__GG____TTAT_CG
22._RUQ_232
____CC____AA_ATCCCG
23._RUQ_232
__AATT_________CG
24._RUQ_232
ATCCAACC_GGAGGGAAAGTTATGGCG
25._MITC-000367
ATCCAACC_GGAGGGAAAGTTATGGCG
 2930313233343536373839404142
_Input profile
AATTGGAGCCCCAAGGGGTTAGTTAGCC
1._GC-04-017-1-17
AATTGGAGCCCCAAGGGGTTAGTTAGCC
2._GC-04-017-1-17
AATTGGAGCCCCAAGGGGTTAGTTAGCC
3._GC-04-017-1-17
AATTGGAGCCCCAAGGGGTTAGTTAGCC
4._GC-04-017-1-17
AATTGGAGCCCCAAGGGGTTAGTTAGCC
5._GC-08-173-4-16
AATTGGAGCCCCAAGGGGTTAGTTAGCC
6._GC-04-017-1-17
AATTGGAGCCCCAAGGGGTTAGTTAGCC
7._GC-08-173-4-16
AATTGGAGCCCCAAGGGGTTAGTTAGCC
8._GC-08-173-4-16
AATTGGAGCCCCAAGGGGTTAGTTAGCC
9._GC-08-173-4-16
AATTGGAGCCCCAAGGGGTTAGTTAGCC
10._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
11._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
12._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
13._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
14._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
15._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
16._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
17._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
18._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
19._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
20._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
21._PLAYA_ALTA_2_[VEN]
AA___CC_AAGG__AG___
22._RUQ_232
___AGCCCCAAGG__AGTT__
23._RUQ_232
____CC_AA____TT__
24._RUQ_232
AAAACCAGCCCCAACCCCAAAGAAAGGG
25._MITC-000367
AAAACCAGCCCCAACCCCAAAGAAAGGG
 4344454647484950515253545556
_Input profile
GGATCTAAAAAGCTCCGGAGGGTTCTCT
1._GC-04-017-1-17
GGATCTAAAAAGCTCCGGAGGGTTCTCT
2._GC-04-017-1-17
GGATCTAAAAAGCTCCGGAGGGTTCTCT
3._GC-04-017-1-17
GGATCTAAAAAGCTCCGGAGGGTTCTCT
4._GC-04-017-1-17
GGATCTAAAAAGCTCCGGAGGGTTCTCT
5._GC-08-173-4-16
GGATCTAAAAAGCTCCGGAGGGTTCTCT
6._GC-04-017-1-17
GGATCTAAAAAGCTCCGGAGGGTTCTCT
7._GC-08-173-4-16
GGATCTAAAAAGCTCCGGAGGGTTCTCT
8._GC-08-173-4-16
GGATCTAAAAAGCTCCGGAGGGTTCTCT
9._GC-08-173-4-16
GGATCTAAAAAGCTCCGGAGGGTTCTCT
10._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
11._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
12._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
13._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
14._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
15._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
16._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
17._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
18._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
19._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
20._PLAYA_ALTA_2_[VEN]
__CT_________CTCT
21._PLAYA_ALTA_2_[VEN]
__CT_________CT_
22._RUQ_232
GGAT__AA______CTCT_
23._RUQ_232
____AA_________
24._RUQ_232
CC_AG_AAAAAG_GGAGCCAGAGAG
25._MITC-000367
CC_AG_AAAAAG_GGAGCCAGAGAG
 5758596061626364656667686970
_Input profile
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
1._GC-04-017-1-17
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
2._GC-04-017-1-17
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
3._GC-04-017-1-17
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
4._GC-04-017-1-17
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
5._GC-08-173-4-16
GT_CCCCCCAAGGGGCCAGTTGGGGCT
6._GC-04-017-1-17
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
7._GC-08-173-4-16
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
8._GC-08-173-4-16
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
9._GC-08-173-4-16
GTAGCCCCCCAAGGGGCCAGTTGGGGCT
10._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
11._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
12._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
13._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
14._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
15._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
16._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
17._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
18._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
19._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
20._PLAYA_ALTA_2_[VEN]
__CC_CCAAGG_CCAGTTGG__
21._PLAYA_ALTA_2_[VEN]
____CCAAGG_CCAGTTGG__
22._RUQ_232
GTGGCCCCCCAA_GGCCAGTTGGGG_
23._RUQ_232
_AG______CCAG_GGGG_
24._RUQ_232
ACAGGGGGGGAAGGGGCCAGAACCGG_
25._MITC-000367
ACAGGGGGGGAAGGGGCCAGAACCGG_
 7172737475767778798081828384
_Input profile
CCGGTTAAAAAAAAAACCGGCTATAATT
1._GC-04-017-1-17
CCGGTTAAAAAAAAAACCGGCTATAATT
2._GC-04-017-1-17
CCGGTTAAAAAAAAAACCGGCTATAATT
3._GC-04-017-1-17
CCGGTTAAAAAAAAAACCGGCTATAATT
4._GC-04-017-1-17
CCGGTTAAAAAAAAAACCGGCTATAATT
5._GC-08-173-4-16
CCGGTTAAAAAAAAAACCGGCTATAATT
6._GC-04-017-1-17
CCGGTT_AAAAAAAACCGGCTATAATT
7._GC-08-173-4-16
CCGGTTAAAAAAAAAACCGGCTAT_TT
8._GC-08-173-4-16
CCGGTTAAAAAAAAAACCGGCTATAATT
9._GC-08-173-4-16
CCGGTTAAAAAAAAAACCGGCTATAATT
10._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
11._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
12._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
13._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
14._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
15._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
16._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
17._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
18._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
19._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
20._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
21._PLAYA_ALTA_2_[VEN]
_GGTT_____CCGG___TT
22._RUQ_232
________CCGG__AATT
23._RUQ_232
_GG______CCGG__AA_
24._RUQ_232
__AAAAAAAAAA_CCCCAGATAAAA
25._MITC-000367
__AAAAAAAAAA_CCCCAGATAAAA
 85868788899091929394    
_Input profile
CCCTTTGGCTCCTTTTATGGX_XX_XX_XX_X
1._GC-04-017-1-17
CCCTTTGGCTCCTTTTATGGX_XX_XX_XX_X
2._GC-04-017-1-17
CCCTTTGGCTCCTTTTATGGX_XX_XX_XX_X
3._GC-04-017-1-17
CCCTTTGGCTCCTTTTATGGX_XX_XX_XX_X
4._GC-04-017-1-17
CCCTTTGGCTCCTTTTATGGX_XX_XX_XX_X
5._GC-08-173-4-16
CCCTTTGGCTCCTTTTATGGX_XX_XX_XX_X
6._GC-04-017-1-17
CCCTTTGGCTCCTTTTATGGX_XX_XX_XX_X
7._GC-08-173-4-16
CCCTTTGGCTCCTTTTATGGX_XX_XX_XX_X
8._GC-08-173-4-16
CCCTTTGGCTCCTTTTAT_X_XX_XX_XX_X
9._GC-08-173-4-16
CCCTTTGGCTCC_TTATGGX_XX_XX_XX_X
10._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
11._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
12._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
13._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
14._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
15._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
16._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
17._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
18._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
19._PLAYA_ALTA_2_[VEN]
CCCT_GG_CCTTTT__X_XX_XX_XX_X
20._PLAYA_ALTA_2_[VEN]
CCCT_GG_CC_TT__X_XX_XX_XX_X
21._PLAYA_ALTA_2_[VEN]
CC__GG_CCTT___X_XX_XX_XX_X
22._RUQ_232
___GG-CCTT___X_XX_XX_XX_X
23._RUQ_232
_CT__CT_TT___X_XX_XX_XX_X
24._RUQ_232
GG_AA__GGAAAAATGGX_XX_XX_XX_X
25._MITC-000367
GG_AA__GGAAAAATGGX_XX_XX_XX_X

Input profile: PLAYA_ALTA_2_[VEN] GC-08-173-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

1._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

7._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 7
 Dapeng Zhang, 2016

11._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 11
 Dapeng Zhang, 2016

12._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 9
 Dapeng Zhang, 2016

13._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 8
 Dapeng Zhang, 2016

14._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 8 > FP
 Dapeng Zhang, 2016

15._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 7
 Dapeng Zhang, 2016

16._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 6
 Dapeng Zhang, 2016

17._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 5
 Dapeng Zhang, 2016

18._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._PLAYA_ALTA_2_[VEN]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0303
 Dapeng Zhang, 2016

20._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 10
 Dapeng Zhang, 2016

21._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

22._PLAYA_ALTA_2_[VEN] RUQ_232

94 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._PLAYA_ALTA_2_[VEN] RUQ_232

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._PLAYA_ALTA_2_[VEN] RUQ_232

50.6 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._PLAYA_ALTA_2_[VEN] MITC-000367

50.6 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240