SNP Profiles of EQX-3348/44   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTCCGGAGCCCCCTCCGGCTCCCT
1._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
2._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
3._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
4._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
5._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
6._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
7._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
8._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
9._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
10._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
11._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
12._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
13._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
14._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
15._GC-08-072-1-94
AACCCTCCGGAGCC_CTCCGGCTCCCT
16._RUQ_1723
___CC__TT_______
17._RUQ_1723
AACC_CCGGAG_GGAG_GGAGGGAG
 1516171819202122232425262728
_Input profile
ATCCAAGGCCCGGGCCAACTAGTTAACC
1._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
2._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
3._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
4._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
5._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
6._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
7._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
8._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
9._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
10._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
11._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
12._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
13._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
14._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
15._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
16._RUQ_1723
___GGCT_________
17._RUQ_1723
ATCCAAGGGG_GGGGAAAGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCATTTGTGGCGCCAGGGGTTTAACTAG
1._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
2._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
3._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
4._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
5._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
6._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
7._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
8._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
9._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
10._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
11._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
12._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
13._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
14._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
15._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
16._RUQ_1723
CC____CG_AG____CT_
17._RUQ_1723
GGATAAACGGCGCCAGCCACAAAAAGAG
 4344454647484950515253545556
_Input profile
CCGGTTTTAGAGAACCAAAGAGGTTTCT
1._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
2._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTCT
3._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTCT
4._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTCT
5._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTCT
6._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTCT
7._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
8._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
9._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
10._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
11._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
12._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
13._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
14._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTCT
15._GC-08-072-1-94
CCGGTTTTAGAG_CCAAAGAGGTTTCT
16._RUQ_1723
_____AG________
17._RUQ_1723
GGCC_AA_AGAAGG_AGAGACAGAG
 5758596061626364656667686970
_Input profile
GTGGCCCTCCAACGGGCCAAGTGGGGTT
1._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
2._GC-08-092-2-15
GTGGCCCTCCAACGGGCCAAGTGGGGTT
3._GC-08-092-2-15
GTGGCCCTCCAACGGGCCAAGTGGGGTT
4._GC-08-092-2-15
GTGGCCCTCCAACGGGCCAAGTGGGGTT
5._GC-08-092-2-15
GTGGCCCTCCAACGGGCCAAGTGGGGTT
6._GC-08-092-2-15
GTGGCCCTCCAACGGGCCAAGTGGGGTT
7._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
8._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
9._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
10._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
11._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
12._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
13._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
14._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
15._GC-08-072-1-94
GTGGCCCTCCAACGGGCCAAGTGGGGTT
16._RUQ_1723
_GG______CCAA_GGGG_
17._RUQ_1723
ACGGGGAGGGAACGGGCCAAACCCGG_
 7172737475767778798081828384
_Input profile
GGAACCACAGCCCCAGCCCGCTATACCT
1._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
2._GC-08-092-2-15
GGAACCACAGCCCCAGCCCGCTATACCT
3._GC-08-092-2-15
GGAACCACAGCCCCAGCCCGCTATACCT
4._GC-08-092-2-15
GGAACCACAGCCCCAGCCCGCTATACCT
5._GC-08-092-2-15
GGAACCACAGCCCCAGCCCGCTATACCT
6._GC-08-092-2-15
GGAACCACAGCCCCAGCCCGCTATACCT
7._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
8._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
9._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
10._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
11._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
12._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
13._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
14._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
15._GC-08-072-1-94
GGAACCACAGCCCCAGCCCGCTATACCT
16._RUQ_1723
_AA______ACCG__AC_
17._RUQ_1723
__GGACAGCCCC_CCCCAGATACAG
 85868788899091929394    
_Input profile
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
1._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
2._GC-08-092-2-15
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
3._GC-08-092-2-15
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
4._GC-08-092-2-15
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
5._GC-08-092-2-15
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
6._GC-08-092-2-15
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
7._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
8._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
9._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
10._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
11._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
12._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
13._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
14._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
15._GC-08-072-1-94
TTCCTTGGCTTTGGCTATGGX_XX_XX_XX_X
16._RUQ_1723
_CC__CT_GG___X_XX_XX_XX_X
17._RUQ_1723
AA_AA__AACCAGATGGX_XX_XX_XX_X

Input profile: COCA_3348_/44_[CHA] GC-08-072-1-94

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

15._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

16._COCA_3348_/44_[CHA] RUQ_1723

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._COCA_3348_/44_[CHA] RUQ_1723

53.1 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240