SNP Profiles of EQX-3348/44   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTCCGGAGCCCCCTCCGGCTCCCT
1._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
2._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
3._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
4._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
5._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
6._GC-08-092-2-15
AACCCTCCGGAGCCCCCTCCGGCTCCCT
7._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
8._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
9._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
10._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
11._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
12._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
13._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
14._GC-08-072-1-94
AACCCTCCGGAGCCCCCTCCGGCTCCCT
15._GC-08-072-1-94
AACCCTCCGGAGCC_CTCCGGCTCCCT
16._RUQ_1723
___CC__TT_______
17._RUQ_1723
AACC_CCGGAG_GGAG_GGAGGGAG
 1516171819202122232425262728
_Input profile
ATCCAAGGCCCGGGCCAACTAGTTAACC
1._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
2._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
3._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
4._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
5._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
6._GC-08-092-2-15
ATCCAAGGCCCGGGCCAACTAGTTAACC
7._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
8._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
9._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
10._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
11._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
12._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
13._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
14._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
15._GC-08-072-1-94
ATCCAAGGCCCGGGCCAACTAGTTAACC
16._RUQ_1723
___GGCT_________
17._RUQ_1723
ATCCAAGGGG_GGGGAAAGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCATTTGTGGCGCCAGGGGTTTAACTAG
1._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
2._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
3._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
4._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
5._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
6._GC-08-092-2-15
CCATTTGTGGCGCCAGGGGTTTAACTAG
7._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
8._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
9._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
10._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
11._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
12._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
13._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
14._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
15._GC-08-072-1-94
CCATTTGTGGCGCCAGGGGTTTAACTAG
16._RUQ_1723
CC____CG_AG____CT_
17._RUQ_1723
GGATAAACGGCGCCAGCCACAAAAAGAG
 4344454647484950515253545556
_Input profile
CCGGTTTTAGAGAACCAAAGAGGTTTTT
1._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTTT
2._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTTT
3._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTTT
4._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTTT
5._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTTT
6._GC-08-092-2-15
CCGGTTTTAGAGAACCAAAGAGGTTTTT
7._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTTT
8._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTTT
9._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTTT
10._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTTT
11._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTTT
12._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTTT
13._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTTTT
14._GC-08-072-1-94
CCGGTTTTAGAGAACCAAAGAGGTTT_
15._GC-08-072-1-94
CCGGTTTTAGAG_CCAAAGAGGTTTTT
16._RUQ_1723
_____AG________
17._RUQ_1723
GGCC_AA_AGAAGG_AGAGACAGAA
 5758596061626364656667686970
_Input profile
CTGTGGCCCTCCAACGGGCCAAGTGGGG
1._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
2._GC-08-092-2-15
CTGTGGCCCTCCAACGGGCCAAGTGGGG
3._GC-08-092-2-15
CTGTGGCCCTCCAACGGGCCAAGTGGGG
4._GC-08-092-2-15
CTGTGGCCCTCCAACGGGCCAAGTGGGG
5._GC-08-092-2-15
CTGTGGCCCTCCAACGGGCCAAGTGGGG
6._GC-08-092-2-15
CTGTGGCCCTCCAACGGGCCAAGTGGGG
7._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
8._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
9._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
10._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
11._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
12._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
13._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
14._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
15._GC-08-072-1-94
CTGTGGCCCTCCAACGGGCCAAGTGGGG
16._RUQ_1723
__GG______CCAA_GGGG
17._RUQ_1723
AGACGGGGAGGGAACGGGCCAAACCCGG
 7172737475767778798081828384
_Input profile
TTGGAACCACAGCCCCAGCCCGCTATAC
1._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
2._GC-08-092-2-15
TTGGAACCACAGCCCCAGCCCGCTATAC
3._GC-08-092-2-15
TTGGAACCACAGCCCCAGCCCGCTATAC
4._GC-08-092-2-15
TTGGAACCACAGCCCCAGCCCGCTATAC
5._GC-08-092-2-15
TTGGAACCACAGCCCCAGCCCGCTATAC
6._GC-08-092-2-15
TTGGAACCACAGCCCCAGCCCGCTATAC
7._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
8._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
9._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
10._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
11._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
12._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
13._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
14._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
15._GC-08-072-1-94
TTGGAACCACAGCCCCAGCCCGCTATAC
16._RUQ_1723
__AA______ACCG__AC
17._RUQ_1723
___GGACAGCCCC_CCCCAGATAC
 8586878889909192939495   
_Input profile
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
1._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
2._GC-08-092-2-15
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
3._GC-08-092-2-15
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
4._GC-08-092-2-15
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
5._GC-08-092-2-15
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
6._GC-08-092-2-15
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
7._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
8._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
9._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
10._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
11._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
12._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
13._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
14._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
15._GC-08-072-1-94
CTTTCCTTGGCTTTGGCTATGGX_XX_XX_X
16._RUQ_1723
__CC__CT_GG___X_XX_XX_X
17._RUQ_1723
AGAA_AA__AACCAGATGGX_XX_XX_X

Input profile: COCA_3348_/44_[CHA] GC-08-072-1-94

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

1._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

16._COCA_3348_/44_[CHA] RUQ_1723

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._COCA_3348_/44_[CHA] RUQ_1723

52.5 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240