SNP Profiles of EQX-3348/44   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTCCGGAGCCCTCCGGCTCCCTAT
1._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
2._GC-08-092-2-15
AACCCTCCGGAGCCCTCCGGCTCCCTAT
3._GC-08-092-2-15
AACCCTCCGGAGCCCTCCGGCTCCCTAT
4._GC-08-092-2-15
AACCCTCCGGAGCCCTCCGGCTCCCTAT
5._GC-08-092-2-15
AACCCTCCGGAGCCCTCCGGCTCCCTAT
6._GC-08-092-2-15
AACCCTCCGGAGCCCTCCGGCTCCCTAT
7._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
8._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
9._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
10._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
11._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
12._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
13._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
14._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
15._GC-08-072-1-94
AACCCTCCGGAGCCCTCCGGCTCCCTAT
16._RUQ_1723
___CC__TT_______
17._RUQ_1723
AACC_CCGGAG_AG_GGAGGGAGAT
 1516171819202122232425262728
_Input profile
CCAAGGCCCGGGCCAACTAGTTAACCCC
1._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
2._GC-08-092-2-15
CCAAGGCCCGGGCCAACTAGTTAACCCC
3._GC-08-092-2-15
CCAAGGCCCGGGCCAACTAGTTAACCCC
4._GC-08-092-2-15
CCAAGGCCCGGGCCAACTAGTTAACCCC
5._GC-08-092-2-15
CCAAGGCCCGGGCCAACTAGTTAACCCC
6._GC-08-092-2-15
CCAAGGCCCGGGCCAACTAGTTAACCCC
7._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
8._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
9._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
10._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
11._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
12._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
13._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
14._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
15._GC-08-072-1-94
CCAAGGCCCGGGCCAACTAGTTAACCCC
16._RUQ_1723
__GGCT_________CC
17._RUQ_1723
CCAAGGGG_GGGGAAAGAGTTAAGGGG
 2930313233343536373839404142
_Input profile
ATTTGTGGCGCCAGGGGTTTAACTAGCC
1._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
2._GC-08-092-2-15
ATTTGTGGCGCCAGGGGTTTAACTAGCC
3._GC-08-092-2-15
ATTTGTGGCGCCAGGGGTTTAACTAGCC
4._GC-08-092-2-15
ATTTGTGGCGCCAGGGGTTTAACTAGCC
5._GC-08-092-2-15
ATTTGTGGCGCCAGGGGTTTAACTAGCC
6._GC-08-092-2-15
ATTTGTGGCGCCAGGGGTTTAACTAGCC
7._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
8._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
9._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
10._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
11._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
12._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
13._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
14._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
15._GC-08-072-1-94
ATTTGTGGCGCCAGGGGTTTAACTAGCC
16._RUQ_1723
____CG_AG____CT__
17._RUQ_1723
ATAAACGGCGCCAGCCACAAAAAGAGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
1._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
2._GC-08-092-2-15
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
3._GC-08-092-2-15
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
4._GC-08-092-2-15
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
5._GC-08-092-2-15
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
6._GC-08-092-2-15
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
7._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
8._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
9._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
10._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
11._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
12._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
13._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
14._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTTTTCTGT
15._GC-08-072-1-94
GGTTTTAGAGCCAAAGAGGTTT_CTGT
16._RUQ_1723
____AG_________
17._RUQ_1723
CC_AA_AGGG_AGAGACAGAAAGAC
 5758596061626364656667686970
_Input profile
GGCCCTCCAACGGGCCAAGTGGGGTTGG
1._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
2._GC-08-092-2-15
GGCCCTCCAACGGGCCAAGTGGGGTTGG
3._GC-08-092-2-15
GGCCCTCCAACGGGCCAAGTGGGGTTGG
4._GC-08-092-2-15
GGCCCTCCAACGGGCCAAGTGGGGTTGG
5._GC-08-092-2-15
GGCCCTCCAACGGGCCAAGTGGGGTTGG
6._GC-08-092-2-15
GGCCCTCCAACGGGCCAAGTGGGGTTGG
7._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
8._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
9._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
10._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
11._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
12._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
13._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
14._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
15._GC-08-072-1-94
GGCCCTCCAACGGGCCAAGTGGGGTTGG
16._RUQ_1723
GG______CCAA_GGGG__
17._RUQ_1723
GGGGAGGGAACGGGCCAAACCCGG__
 7172737475767778798081828384
_Input profile
AACCACAGCCCCAGCCCGCTATACCTTT
1._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
2._GC-08-092-2-15
AACCACAGCCCCAGCCCGCTATACCTTT
3._GC-08-092-2-15
AACCACAGCCCCAGCCCGCTATACCTTT
4._GC-08-092-2-15
AACCACAGCCCCAGCCCGCTATACCTTT
5._GC-08-092-2-15
AACCACAGCCCCAGCCCGCTATACCTTT
6._GC-08-092-2-15
AACCACAGCCCCAGCCCGCTATACCTTT
7._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
8._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
9._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
10._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
11._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
12._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
13._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
14._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
15._GC-08-072-1-94
AACCACAGCCCCAGCCCGCTATACCTTT
16._RUQ_1723
AA______ACCG__AC__
17._RUQ_1723
_GGACAGCCCC_CCCCAGATACAGAA
 858687888990919293     
_Input profile
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
1._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
2._GC-08-092-2-15
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
3._GC-08-092-2-15
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
4._GC-08-092-2-15
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
5._GC-08-092-2-15
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
6._GC-08-092-2-15
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
7._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
8._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
9._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
10._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
11._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
12._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
13._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
14._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
15._GC-08-072-1-94
CCTTGGCTTTGGCTATGGX_XX_XX_XX_XX_X
16._RUQ_1723
CC__CT_GG___X_XX_XX_XX_XX_X
17._RUQ_1723
_AA__AACCAGATGGX_XX_XX_XX_XX_X

Input profile: COCA_3348_/44_[CHA] GC-08-072-1-94

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

1._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._COCA_3348_/44_[CHA] GC-08-092-2-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

15._COCA_3348_/44_[CHA] GC-08-072-1-94

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._COCA_3348_/44_[CHA] RUQ_1723

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._COCA_3348_/44_[CHA] RUQ_1723

52.5 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240