SNP Profiles of ICS-89 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CT	CC	AG	GG	CT	CC	CC	CC	GG	CC	CC	CC
1._GC-08-066-1-88	AA	AA	CT	CC	AG	GG	CT	CC	CC	CC	GG	CC	CC	CC
2._GC-08-066-1-88	AA	AA	CT	CC	AG	GG	CT	CC	CC	CC	GG	CC	CC	CC
3._GC-08-066-1-88	AA	AA	CT	CC	AG	GG	CT	CC	CC	CC	GG	CC	CC	CC
4._GC-08-066-1-88	AA	AA	CT	CC	AG	GG	CT	CC	CC	CC	GG	CC	CC	CC
5._ICS_89	AA	AA	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
6._ICS_89	AA	AA	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
7._ICS_89	AA	AA	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
8._ICS_89	AA	AA	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
9._ICS_89	AA	AA	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
10._ICS_89	AA	AA	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AA	AA	GG	CG	GG	TT	AG	TT	AG	AA	AT	CG
1._GC-08-066-1-88	AT	CC	AA	AA	GG	CG	GG	TT	AG	TT	AG	AA	AT	CG
2._GC-08-066-1-88	AT	CC	AA	AA	GG	CG	GG	TT	AG	TT	AG	AA	AT	CG
3._GC-08-066-1-88	AT	CC	AA	AA	GG	CG	GG	TT	AG	TT	AG	AA	AT	CG
4._GC-08-066-1-88	AT	CC	AA	AA	GG	CG	GG	TT	AG	TT	AG	AA	AT	CG
5._ICS_89	_	_	_	AA	_	_	GG	_	_	_	_	AA	AT	_
6._ICS_89	_	_	_	AA	_	_	GG	_	_	_	_	AA	AT	_
7._ICS_89	_	_	_	AA	_	_	GG	_	_	_	_	AA	AT	_
8._ICS_89	_	_	_	AA	_	_	GG	_	_	_	_	AA	AT	_
9._ICS_89	_	_	_	AA	_	_	GG	_	_	_	_	AA	AT	_
10._ICS_89	_	_	_	AA	_	_	GG	_	_	_	_	AA	AT	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	AA	TT	GG	CC	GG	GG	GG	GG	AA	CT	AA	CC	TT
1._GC-08-066-1-88	CC	AA	TT	GG	CC	GG	GG	GG	GG	AA	CT	AA	CC	TT
2._GC-08-066-1-88	CC	AA	TT	GG	CC	GG	GG	GG	GG	AA	CT	AA	CC	TT
3._GC-08-066-1-88	CC	AA	TT	GG	CC	GG	GG	GG	GG	AA	CT	AA	CC	TT
4._GC-08-066-1-88	CC	AA	TT	GG	CC	GG	GG	GG	GG	AA	CT	AA	CC	TT
5._ICS_89	CC	AA	_	_	CC	GG	GG	_	_	AA	_	_	_	_
6._ICS_89	CC	AA	_	_	CC	GG	GG	_	_	AA	_	_	_	_
7._ICS_89	CC	AA	_	_	CC	GG	GG	_	_	AA	_	_	_	_
8._ICS_89	CC	AA	_	_	CC	GG	GG	_	_	AA	_	_	_	_
9._ICS_89	CC	AA	_	_	CC	GG	GG	_	_	AA	_	_	_	_
10._ICS_89	CC	AA	_	_	CC	GG	GG	_	_	AA	_	_	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	CC	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT	GT	AA
1._GC-08-066-1-88	AT	CC	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT	GT	AA
2._GC-08-066-1-88	AT	CC	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT	GT	AA
3._GC-08-066-1-88	AT	CC	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT	GT	AA
4._GC-08-066-1-88	AT	CC	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT	GT	AA
5._ICS_89	_	CC	_	_	_	_	_	_	_	_	CT	CT	_	_
6._ICS_89	_	CC	_	_	_	_	_	_	_	_	CT	CT	_	_
7._ICS_89	_	CC	_	_	_	_	_	_	_	_	CT	CT	_	_
8._ICS_89	_	CC	_	_	_	_	_	_	_	_	CT	CT	_	_
9._ICS_89	_	CC	_	_	_	_	_	_	_	_	CT	CT	_	_
10._ICS_89	_	CC	_	_	_	_	_	_	_	_	CT	CT	_	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CT	CT	AC	GG	AG	AC	AA	TT	GT	GG	TT	CC	GG
1._GC-08-066-1-88	CC	CT	CT	AC	GG	AG	AC	AA	TT	GT	GG	TT	CC	GG
2._GC-08-066-1-88	CC	CT	CT	AC	GG	AG	AC	AA	TT	GT	GG	TT	CC	GG
3._GC-08-066-1-88	CC	CT	CT	AC	GG	AG	AC	AA	TT	GT	GG	TT	CC	GG
4._GC-08-066-1-88	CC	CT	CT	AC	GG	AG	AC	AA	TT	GT	GG	TT	CC	GG
5._ICS_89	CC	_	CT	AC	GG	_	AC	AA	TT	GT	_	_	_	GG
6._ICS_89	CC	_	CT	AC	GG	_	AC	AA	TT	GT	_	_	_	GG
7._ICS_89	CC	_	CT	AC	GG	_	AC	AA	TT	GT	_	_	_	GG
8._ICS_89	CC	_	CT	AC	GG	_	AC	AA	TT	GT	_	_	_	GG
9._ICS_89	CC	_	CT	AC	GG	_	AC	AA	TT	GT	_	_	_	GG
10._ICS_89	_	_	CT	AC	GG	_	AC	AA	TT	GT	_	_	_	GG

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	AC	AG	CC	AA	AG	CC	CG	TT	AA	AA	CT	TT	TT
1._GC-08-066-1-88	TT	AC	AG	CC	AA	AG	CC	CG	TT	AA	AA	CT	TT	TT
2._GC-08-066-1-88	TT	AC	AG	CC	AA	AG	CC	CG	TT	AA	AA	CT	TT	TT
3._GC-08-066-1-88	TT	AC	AG	CC	AA	AG	CC	CG	TT	AA	AA	CT	TT	TT
4._GC-08-066-1-88	TT	AC	AG	CC	AA	AG	CC	CG	TT	AA	AA	CT	TT	TT
5._ICS_89	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT	TT
6._ICS_89	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT	TT
7._ICS_89	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT	TT
8._ICS_89	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT	TT
9._ICS_89	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT	TT
10._ICS_89	TT	_	_	_	_	_	CC	GG	_	_	_	CT	TT	TT

	85	86	87	88	89	90	91	92
_Input profile	TT	GG	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-066-1-88	TT	GG	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-08-066-1-88	TT	GG	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-066-1-88	TT	GG	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-08-066-1-88	TT	GG	TT	CT	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_89	_	GG	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_89	_	GG	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_89	_	GG	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_89	_	GG	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_89	_	GG	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_89	_	GG	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_89 GC-08-066-1-88

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

1._ICS_89 GC-08-066-1-88

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

2._ICS_89 GC-08-066-1-88

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

3._ICS_89 GC-08-066-1-88

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._ICS_89 GC-08-066-1-88

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._ICS_89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8188 7

Dapeng Zhang, 2016

6._ICS_89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8188 6

Dapeng Zhang, 2016

7._ICS_89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8188 5

Dapeng Zhang, 2016

8._ICS_89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8188 3

Dapeng Zhang, 2016

9._ICS_89

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8188 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._ICS_89

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240