SNP Profiles of PA-72   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAACCTCCGGGGCCCCCCCCGGTTCCTT
1._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
2._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
3._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
4._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
5._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
6._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
7._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
8._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
9._GC-08-051-1-62
AAACCTCCGGGGCCCCCCCCGGTTCCTT
10._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
11._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
12._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
13._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
14._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
15._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
16._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
17._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
18._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
19._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
20._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
21._PA_72_[PER]
AAACCTCC____CCCCGG_CC_
22._GC-08-51-1-62
AAAC_CCGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGGGCCGGCTAATTGGAAAACC
1._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
2._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
3._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
4._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
5._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
6._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
7._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
8._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
9._GC-08-051-1-62
AACCAAGGGGCCGGCTAATTGGAAAACC
10._PA_72_[PER]
___GG__GG____AAAA_
11._PA_72_[PER]
___GG__GG____AAAA_
12._PA_72_[PER]
___GG__GG____AAAA_
13._PA_72_[PER]
___GG__GG____AAAA_
14._PA_72_[PER]
___GG__GG____AAAA_
15._PA_72_[PER]
___GG__GG____AAAA_
16._PA_72_[PER]
___GG__GG____AAAA_
17._PA_72_[PER]
___GG__GG____AAAA_
18._PA_72_[PER]
___GG__GG____AAAA_
19._PA_72_[PER]
___GG__GG____AAAA_
20._PA_72_[PER]
___GG__GG____AAAA_
21._PA_72_[PER]
___GGTTCCGG____AAAA_
22._GC-08-51-1-62
TTCCAGGGCC_GGAGAAAAGGAAAAGG
 2930313233343536373839404142
_Input profile
GGAATTTTGGCGCCAGGTGGGTAGTTAG
1._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
2._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
3._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
4._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
5._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
6._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
7._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
8._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
9._GC-08-051-1-62
GGAATTTTGGCGCCAGGTGGGTAGTTAG
10._PA_72_[PER]
GGAA___CG_AGGT__AG__
11._PA_72_[PER]
GGAA___CG_AGGT__AG__
12._PA_72_[PER]
GGAA___CG_AGGT__AG__
13._PA_72_[PER]
GGAA___CG_AGGT__AG__
14._PA_72_[PER]
GGAA___CG_AGGT__AG__
15._PA_72_[PER]
GGAA___CG_AGGT__AG__
16._PA_72_[PER]
GGAA___CG_AGGT__AG__
17._PA_72_[PER]
GGAA___CG_AGGT__AG__
18._PA_72_[PER]
GGAA___CG_AGGT__AG__
19._PA_72_[PER]
GGAA___CG_AGGT__AG__
20._PA_72_[PER]
GGAA___CG_AGGT__AG__
21._PA_72_[PER]
GGAA___CG_AGGT__AG__
22._GC-08-51-1-62
CCAAAAAAGGCGCCAGACCCACAGAAAG
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAAGGCCCT
1._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
2._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
3._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
4._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
5._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
6._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
7._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
8._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
9._GC-08-051-1-62
CCGGTTCCAAGGAACCCCGGAAGGCCCT
10._PA_72_[PER]
___CC________CCCT
11._PA_72_[PER]
___CC________CCCT
12._PA_72_[PER]
___CC________CCCT
13._PA_72_[PER]
___CC________CCCT
14._PA_72_[PER]
___CC________CCCT
15._PA_72_[PER]
___CC________CCCT
16._PA_72_[PER]
___CC________CCCT
17._PA_72_[PER]
___CC________CCCT
18._PA_72_[PER]
___CC________CCCT
19._PA_72_[PER]
___CC________CCCT
20._PA_72_[PER]
___CC________CCCT
21._PA_72_[PER]
___CC________CCCT
22._GC-08-51-1-62
GGCC_GG_GGAAGG_GGAACCGGAG
 5758596061626364656667686970
_Input profile
TTGGCCCCCTAAGGGGACAGGTGGAGCC
1._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
2._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
3._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
4._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
5._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
6._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
7._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
8._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
9._GC-08-051-1-62
TTGGCCCCCTAAGGGGACAGGTGGAGCC
10._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
11._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
12._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
13._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
14._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
15._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
16._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
17._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
18._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
19._PA_72_[PER]
__CC_CTAAGG_ACAGGTGG__
20._PA_72_[PER]
__CC_CTACGG_ACAGGTGG__
21._PA_72_[PER]
__-_CTACGG_ACAGGT-__
22._GC-08-51-1-62
AAGGGGGGAGACGGGGACAGACCCAG_
 7172737475767778798081828384
_Input profile
CCAACTACAAAACCAGACGGCCATAATT
1._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
2._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
3._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
4._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
5._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
6._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
7._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
8._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
9._GC-08-051-1-62
CCAACTACAAAACCAGACGGCCATAATT
10._PA_72_[PER]
_AACT_____ACGG___TT
11._PA_72_[PER]
_AACT_____ACGG___TT
12._PA_72_[PER]
_AACT_____ACGG___TT
13._PA_72_[PER]
_AACT_____ACGG___TT
14._PA_72_[PER]
_AACT_____ACGG___TT
15._PA_72_[PER]
_AACT_____ACGG___TT
16._PA_72_[PER]
_AACT_____ACGG___TT
17._PA_72_[PER]
_AACT_____ACGG___TT
18._PA_72_[PER]
_AACT_____ACGG___TT
19._PA_72_[PER]
_AACT_____ACGG___TT
20._PA_72_[PER]
_AACT_____ACGG___TT
21._PA_72_[PER]
_AACT_____ACGG___TT
22._GC-08-51-1-62
__AGACAAAACC_ACCCGGATAAAA
 85868788899091929394    
_Input profile
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
1._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
2._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
3._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
4._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
5._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
6._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
7._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
8._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
9._GC-08-051-1-62
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
10._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
11._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
12._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
13._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
14._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
15._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
16._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
17._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
18._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
19._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
20._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
21._PA_72_[PER]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
22._GC-08-51-1-62
AG_AG__GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_72_[PER] GC-08-051-1-62

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

5._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

7._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

11._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

13._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

14._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

15._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

16._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

17._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

18._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

19._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._PA_72_[PER]

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

21._PA_72_[PER]

96.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

22._PA_72_[PER] GC-08-51-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 62, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240