SNP Profiles of LP-432 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	AC	GG	AG	CT	CT	CT	CT	AG	TT	CT	TT	AT
1._LP_4_/32_[POU]	AA	AC	AC	_	_	_	_	CT	CT	AG	_	CT	_	_
2._RUQ_883	_	_	CC	_	_	TT	_	TT	_	_	TT	CC	_	_
3._RUQ_883	AA	AA	CC	_	_	_	_	TT	CT	GG	_	CC	_	_
4._GC-07-069-4-05	AA	AA	CC	GG	AG	CT	CC	TT	CT	GG	TT	CC	CC	AT
5._GC-07-081-5-03	AA	AA	CC	GG	AG	CT	CC	TT	CT	GG	TT	CC	CC	AT
6._GC-07-081-5-03	AA	AA	CC	GG	AG	CT	CC	TT	CT	GG	TT	CC	CC	AT
7._GC-07-081-5-03	AA	AA	CC	GG	AG	CT	CC	TT	CT	GG	TT	CC	CC	AT
8._GC-07-081-5-03	AA	AA	CC	GG	AG	CT	CC	TT	CT	GG	TT	CC	CC	AT
9._RUQ_883	_	_	CC	_	_	CT	_	_	_	_	_	_	_	_
10._LP_4_/32_[POU]	AA	AA	CC	_	_	_	_	TT	CT	GG	_	CC	_	_
11._LP_4_/32_[POU]	AA	AA	CC	_	_	_	_	TT	CT	GG	_	CC	_	_
12._LP_4_/32_[POU]	AA	AA	CC	_	_	_	_	TT	CT	GG	_	CC	_	_
13._LP_4_/32_[POU]	AA	AA	CC	_	_	_	_	TT	CT	GG	_	CC	_	_
14._LP_4_/32_[POU]	AA	AA	CC	_	_	_	_	TT	CT	GG	_	CC	_	_
15._LP_4_/32_[POU]	AA	AA	CC	_	_	_	_	TT	CT	GG	_	CC	_	_
16._RUQ_883	AA	AA	CC	GG	AG	_	GG	AA	_	GG	AA	GG	GG	AT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	AA	AG	CG	CC	CG	CT	AA	TT	GG	TT	AA	CC	CG
1._LP_4_/32_[POU]	_	_	AG	_	_	CG	_	_	_	_	TT	AA	_	CG
2._RUQ_883	_	_	_	_	CG	_	_	_	_	GG	_	TT	GG	CG
3._RUQ_883	_	_	AA	_	_	GG	_	_	_	_	AT	TT	_	CG
4._GC-07-069-4-05	CC	AA	AA	GG	CG	GG	CC	GG	TT	GG	AT	TT	GG	CG
5._GC-07-081-5-03	CC	AA	AA	GG	CG	GG	CC	GG	TT	GG	AT	TT	GG	CG
6._GC-07-081-5-03	CC	AA	AA	GG	CG	GG	CC	GG	TT	GG	AT	TT	GG	CG
7._GC-07-081-5-03	CC	AA	AA	GG	CG	GG	CC	GG	TT	GG	AT	TT	GG	CG
8._GC-07-081-5-03	CC	AA	AA	GG	CG	GG	CC	GG	TT	GG	AT	TT	GG	CG
9._RUQ_883	_	_	AG	CT	_	_	_	_	_	_	_	_	_	GG
10._LP_4_/32_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	TT	_	CG
11._LP_4_/32_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	TT	_	CG
12._LP_4_/32_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	TT	_	CG
13._LP_4_/32_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	TT	_	CG
14._LP_4_/32_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	TT	_	CG
15._LP_4_/32_[POU]	_	_	AA	_	_	GG	_	_	_	_	AT	TT	_	CG
16._RUQ_883	CC	AG	AA	CC	_	GG	GG	AG	AA	GG	AT	TT	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GG	GG	CC	CC	AG	TT	GG	TT	AA	CT	AG	CC
1._LP_4_/32_[POU]	AA	_	_	_	CC	_	AG	TT	_	_	AA	_	_	_
2._RUQ_883	_	_	_	AG	CC	CC	AG	GG	_	_	AA	CT	_	_
3._RUQ_883	AA	_	_	_	CC	_	AG	GG	_	_	AG	_	_	_
4._GC-07-069-4-05	AA	CT	GT	AG	CC	CC	AG	GG	GG	GT	AA	CT	AA	CC
5._GC-07-081-5-03	AA	CT	GT	AG	CC	CC	AG	GG	GG	GT	AA	CT	AA	CC
6._GC-07-081-5-03	AA	CT	GT	AG	CC	CC	AG	GG	GG	GT	AA	CT	AA	CC
7._GC-07-081-5-03	AA	CT	GT	AG	CC	CC	AG	GG	GG	GT	AA	CT	AA	CC
8._GC-07-081-5-03	AA	CT	GT	AG	CC	CC	AG	GG	GG	GT	AA	CT	AA	CC
9._RUQ_883	_	_	_	_	CG	_	AA	_	_	_	_	CT	_	_
10._LP_4_/32_[POU]	AA	_	_	_	CC	_	AG	GG	_	_	AA	_	_	_
11._LP_4_/32_[POU]	AA	_	_	_	CC	_	AG	GG	_	_	AA	_	_	_
12._LP_4_/32_[POU]	AA	_	_	_	CC	_	AG	GG	_	_	AA	_	_	_
13._LP_4_/32_[POU]	AA	_	_	_	CC	_	AG	GG	_	_	AA	_	_	_
14._LP_4_/32_[POU]	AA	_	_	_	CC	_	AG	GG	_	_	AA	_	_	_
15._LP_4_/32_[POU]	AA	_	_	_	CC	_	AG	GG	_	_	AA	_	_	_
16._RUQ_883	AA	AG	AC	AG	CC	CC	AG	CC	CC	AC	AA	AG	AA	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CT	AA	AG	AA	CC	CC	GG	AG	TT	CT	CT	TT
1._LP_4_/32_[POU]	_	_	CT	_	_	_	_	_	_	_	_	CT	CT	_
2._RUQ_883	GG	AT	_	_	AG	_	_	_	_	_	_	CC	_	GT
3._RUQ_883	_	_	CC	_	_	_	_	_	_	_	_	CC	CT	_
4._GC-07-069-4-05	GG	AT	CC	AG	AG	AA	CT	CC	GG	GG	GT	CC	CT	GT
5._GC-07-081-5-03	GG	AT	CC	AG	AG	AA	CT	CC	GG	GG	GT	CC	CT	GT
6._GC-07-081-5-03	GG	AT	CC	AG	AG	AA	CT	CC	GG	GG	GT	CC	CT	GT
7._GC-07-081-5-03	GG	AT	CC	AG	AG	AA	CT	CC	GG	GG	GT	CC	CT	GT
8._GC-07-081-5-03	GG	AT	CC	AG	AG	AA	CT	CC	GG	GG	GT	CC	CT	GT
9._RUQ_883	_	_	_	_	AG	_	_	_	_	_	_	_	_	_
10._LP_4_/32_[POU]	_	_	CC	_	_	_	_	_	_	_	_	CC	CT	_
11._LP_4_/32_[POU]	_	_	CC	_	_	_	_	_	_	_	_	CC	CT	_
12._LP_4_/32_[POU]	_	_	CC	_	_	_	_	_	_	_	_	CC	CT	_
13._LP_4_/32_[POU]	_	_	CC	_	_	_	_	_	_	_	_	CC	CT	_
14._LP_4_/32_[POU]	_	_	CC	_	_	_	_	_	_	_	_	CC	CT	_
15._LP_4_/32_[POU]	_	_	CC	_	_	_	_	_	_	_	_	CC	CT	_
16._RUQ_883	CC	_	GG	_	AG	GG	AG	_	GG	GG	AC	GG	AG	AC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AG	CC	CT	CC	AC	CG	GG	CC	AG	GT	GG	GG	CT	CC
1._LP_4_/32_[POU]	_	CC	_	CC	AC	CG	_	CC	AG	GT	GG	_	_	_
2._RUQ_883	AG	CG	CT	CC	AC	_	GG	AC	GG	GT	GT	AG	_	_
3._RUQ_883	_	CG	_	CC	AC	GG	_	AC	GG	GT	GT	_	_	_
4._GC-07-069-4-05	AG	CG	CT	CC	AC	GG	GG	AC	GG	GT	GT	AG	TT	CC
5._GC-07-081-5-03	AG	CG	CT	CC	AC	GG	GG	AC	GG	GT	GT	AG	TT	CC
6._GC-07-081-5-03	AG	CG	CT	CC	AC	GG	GG	AC	GG	GT	GT	AG	TT	CC
7._GC-07-081-5-03	AG	CG	CT	CC	AC	GG	GG	AC	GG	GT	GT	AG	TT	CC
8._GC-07-081-5-03	AG	CG	CT	CC	AC	GG	GG	AC	GG	GT	GT	AG	TT	CC
9._RUQ_883	AG	_	_	_	_	_	_	CC	AA	_	GT	AG	_	_
10._LP_4_/32_[POU]	_	_	_	CC	AC	GG	_	AC	GG	GT	GT	_	_	_
11._LP_4_/32_[POU]	_	CG	_	CC	AC	GG	_	AC	GG	GT	GT	_	_	_
12._LP_4_/32_[POU]	_	CG	_	CC	AC	GG	_	AC	GG	GT	GT	_	_	_
13._LP_4_/32_[POU]	_	CG	_	CC	AC	GG	_	AC	GG	GT	GT	_	_	_
14._LP_4_/32_[POU]	_	CG	_	CC	AC	GG	_	AC	GG	GT	GT	_	_	_
15._LP_4_/32_[POU]	_	CG	_	CC	AC	GG	_	AC	GG	GT	GT	_	_	_
16._RUQ_883	AG	CG	AG	GG	AC	GG	GG	AC	GG	AC	AC	AG	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AG	CT	CC	AA	AC	AC	AA	AC	CG	CC	TT	AC	CT	TT
1._LP_4_/32_[POU]	AG	CT	_	_	_	_	_	AC	CG	_	_	_	CT	TT
2._RUQ_883	_	_	_	_	_	_	_	CC	CG	_	_	CC	CT	_
3._RUQ_883	AG	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT
4._GC-07-069-4-05	GG	TT	CC	GG	CC	AA	AG	CC	CG	CT	AA	CC	CT	TT
5._GC-07-081-5-03	GG	TT	CC	GG	CC	AA	AG	CC	CG	CT	AA	CC	CT	TT
6._GC-07-081-5-03	GG	TT	CC	GG	CC	AA	AG	CC	CG	CT	AA	CC	CT	TT
7._GC-07-081-5-03	GG	TT	CC	GG	CC	AA	AG	CC	CG	CT	AA	CC	CT	TT
8._GC-07-081-5-03	GG	TT	CC	GG	CC	AA	AG	CC	CG	CT	AA	CC	CT	TT
9._RUQ_883	AA	_	_	_	_	_	_	AA	CC	_	_	AC	_	_
10._LP_4_/32_[POU]	AG	TT	_	_	_	_	_	CC	GG	_	_	_	CT	TT
11._LP_4_/32_[POU]	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT
12._LP_4_/32_[POU]	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT
13._LP_4_/32_[POU]	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT
14._LP_4_/32_[POU]	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT
15._LP_4_/32_[POU]	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT	TT
16._RUQ_883	_	AA	CC	GG	CC	AA	_	CC	CC	AG	AA	CC	AG	AA

	85	86	87	88	89	90	91	92	93
_Input profile	CT	CT	AA	CT	CC	GT	CT	AT	GG	X_X	X_X	X_X	X_X	X_X
1._LP_4_/32_[POU]	CT	_	AA	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X
2._RUQ_883	_	_	AG	-	CT	TT	_	_	_	X_X	X_X	X_X	X_X	X_X
3._RUQ_883	CT	_	AG	_	CT	TT	CT	_	_	X_X	X_X	X_X	X_X	X_X
4._GC-07-069-4-05	TT	TT	AG	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
5._GC-07-081-5-03	TT	TT	AG	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
6._GC-07-081-5-03	TT	TT	AG	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
7._GC-07-081-5-03	TT	TT	AG	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
8._GC-07-081-5-03	TT	TT	AG	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
9._RUQ_883	CC	_	_	CC	_	GT	_	_	_	X_X	X_X	X_X	X_X	X_X
10._LP_4_/32_[POU]	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
11._LP_4_/32_[POU]	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
12._LP_4_/32_[POU]	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
13._LP_4_/32_[POU]	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
14._LP_4_/32_[POU]	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
15._LP_4_/32_[POU]	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
16._RUQ_883	_	AA	_	_	AG	AA	AA	AT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: LP_4_/32_[POU] GC-07-069-4-05

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

1._LP_4_/32_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7405 3 > FP

Dapeng Zhang, 2016

2._LP_4_/32_[POU] RUQ_883

68.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LP_4_/32_[POU] RUQ_883

67.9 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._LP_4_/32_[POU] GC-07-069-4-05

67.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

5._LP_4_/32_[POU] GC-07-081-5-03

67.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._LP_4_/32_[POU] GC-07-081-5-03

67.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._LP_4_/32_[POU] GC-07-081-5-03

67.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

8._LP_4_/32_[POU] GC-07-081-5-03

67.2 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._LP_4_/32_[POU] RUQ_883

66.7 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

10._LP_4_/32_[POU]

65.8 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C752

Dapeng Zhang, 2016

11._LP_4_/32_[POU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7503 3 > FP

Dapeng Zhang, 2016

12._LP_4_/32_[POU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7503 4

Dapeng Zhang, 2016

13._LP_4_/32_[POU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7503 2

Dapeng Zhang, 2016

14._LP_4_/32_[POU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7503 1

Dapeng Zhang, 2016

15._LP_4_/32_[POU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7405 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._LP_4_/32_[POU] RUQ_883

39.4 %
80 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240