SNP Profiles of EET-272   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
9._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
10._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
11._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
12._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
13._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
14._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
15._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
16._RUQ_6
__CTAA__TT_CT__TTTT_
17._EET_272_[ECU]
AAAACTAA____CT_AG_CT_
18._RUQ_6
______TT_______
19._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
20._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
21._EET_272_[ECU]
AAACCCCC____CCCCGG_CC_
22._EET_272_[ECU]
AAACCCCC____CCCCGG_CC_
23._RUQ_6
AAAA_AAGGGG_GGAG_GGAAAGAA
24._MITC-000381
AAAA_AAGGGG_GGAG_GGAAAGAA
25._GC-03-32-3-11
AAAC_CCGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCTAATTGGTTAACCCC
1._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
2._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
3._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
4._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
8._EET_272_[ECU]
__GG__GG____TTAA_CC
9._EET_272_[ECU]
__GG__GG____TTAA_CC
10._EET_272_[ECU]
__GG__GG____TTAA_CC
11._EET_272_[ECU]
__GG__GG____TTAA_CC
12._EET_272_[ECU]
__GG__GG____TTAA_CC
13._EET_272_[ECU]
__GG__GG____TTAA_CC
14._EET_272_[ECU]
__GG__GG____TTAA_CC
15._EET_272_[ECU]
__GG__GG____TTAA_CC
16._RUQ_6
____CC____GG_AACCCC
17._EET_272_[ECU]
_____GG________
18._RUQ_6
__GGTT_________CC
19._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
20._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
21._EET_272_[ECU]
__AG__CC____ATAA_GG
22._EET_272_[ECU]
__AG__CC____ATAA_GG
23._RUQ_6
TTAAGGCC_GGAGAAAAGGTTAAGGGG
24._MITC-000381
TTAAGGCC_GGAGAAAAGGTTAAGGGG
25._GC-03-32-3-11
TTCCAGCG_CCAAAGAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAGGGGGTTAACCGGCC
1._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
2._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
3._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
4._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._EET_272_[ECU]
AA___GG_AGGG__AA___
9._EET_272_[ECU]
AA___GG_AGGG__AA___
10._EET_272_[ECU]
AA___GG_AGGG__AA___
11._EET_272_[ECU]
AA___GG_AGGG__AA___
12._EET_272_[ECU]
AA___GG_AGGG__AA___
13._EET_272_[ECU]
AA___GG_AGGG__AA___
14._EET_272_[ECU]
AA___GG_AGGG__AA___
15._EET_272_[ECU]
AA___GG_AGGG__AA___
16._RUQ_6
___GGGGCCAGGG__AACC__
17._EET_272_[ECU]
AA_____AG___AA___
18._RUQ_6
____GG_AG____CC__
19._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
20._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
21._EET_272_[ECU]
AA___CG_AGGG__GG___
22._EET_272_[ECU]
AA___CG_AGGG__GG___
23._RUQ_6
AAAACCGGGGCCAGCCCCAAAAGGGGGG
24._MITC-000381
AAAACCGGGGCCAGCCCCAAAAGGGGGG
25._GC-03-32-3-11
AAAAACGGCGCCAGCCCCAAGGAGAGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCACGGGGGGCTCCTT
1._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
2._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
3._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
4._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
5._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
6._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
7._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
8._EET_272_[ECU]
__TT________CTCC_
9._EET_272_[ECU]
__TT________CTCC_
10._EET_272_[ECU]
__TT________CTCC_
11._EET_272_[ECU]
__TT________CTCC_
12._EET_272_[ECU]
__TT________CTCC_
13._EET_272_[ECU]
__TT________CTCC_
14._EET_272_[ECU]
__TT________CTCC_
15._EET_272_[ECU]
__TT________CTCC_
16._RUQ_6
GGTT__AG______CT_TT
17._EET_272_[ECU]
___________CTCT_
18._RUQ_6
____AG_________
19._GC-03-032-3-11
GGTTCTAAGGAACC_GGAAGGCCCTTT
20._GC-03-032-3-11
GGTTCTAAGGAACCCCGGAAGGCCCTTT
21._EET_272_[ECU]
__CT________CCCT_
22._EET_272_[ECU]
__CT________CCCT_
23._RUQ_6
CC_AA_AGAAGG_GGGGCCAGGGAA
24._MITC-000381
CC_AA_AGAAGG_GGGGCCAGGGAA
25._GC-03-32-3-11
CC_AG_GGAAGG_GGAACCGGAGAA
 5758596061626364656667686970
_Input profile
GGCCCCTTAAGGGGACAAGTGGGGTTCG
1._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
2._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
3._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
4._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
5._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
6._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
7._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
8._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
9._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
10._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
11._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
12._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
13._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
14._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
15._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
16._RUQ_6
-CCCCTTAA_GGACAAGTGGGG__
17._EET_272_[ECU]
_CC_TTAAGG_ACAAGTGG___
18._RUQ_6
GG______ACAA_GGGG__
19._GC-03-032-3-11
GGCCCCCCAAGGGGCCAGGTGGAGTTCC
20._GC-03-032-3-11
GGCCCCCC_GGGGCCAGGTGGAGTTCC
21._EET_272_[ECU]
_CC_CCAAGG_CCAGGTGG___
22._EET_272_[ECU]
_CC_CC_GG_CCAGGTGG___
23._RUQ_6
GGGGGGAAAAGGGGACAAACCCGG__
24._MITC-000381
GGGGGGAAAAGGGGACAAACCCGG__
25._GC-03-32-3-11
GGGGGGGGACGGGGCCAGACCCAG__
 7172737475767778798081828384
_Input profile
AACTACCCCCAACCCCCCAAACCTCTCC
1._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
2._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
3._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
4._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
5._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
6._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
7._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
8._EET_272_[ECU]
AACT____CCCC___CTCTCC
9._EET_272_[ECU]
AACT____CCCC___CTCTCC
10._EET_272_[ECU]
AACT____CCCC___CTCTCC
11._EET_272_[ECU]
AACT____CCCC___CTCTCC
12._EET_272_[ECU]
AACT____CCCC___CTCTCC
13._EET_272_[ECU]
AACT____CCCC___CTCTCC
14._EET_272_[ECU]
AACT____CCCC___CTCTCC
15._EET_272_[ECU]
AACT____CCCC___CTCTCC
16._RUQ_6
______CCCC__ACCT__
17._EET_272_[ECU]
AACT_________CTCTCT
18._RUQ_6
AA_____ACCC__AC__CC
19._GC-03-032-3-11
AGCTCCACCCAAACGGCCTTAATTCTCC
20._GC-03-032-3-11
AGCTCCACCCAAACGGCCTTAATTCTCC
21._EET_272_[ECU]
AGCT____ACGG___TTCTCC
22._EET_272_[ECU]
AGCT____ACGG___TTCTCC
23._RUQ_6
_AGACCCCC_CCGGGGAAACAGAG_
24._MITC-000381
_AGACCCCC_CCGGGGAAACAGAG_
25._GC-03-32-3-11
_AGCCACCC_ACCCGGTTAAAAAG_
 8586878889909192      
_Input profile
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
1._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
2._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
3._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
4._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
5._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
6._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
7._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
8._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
9._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
10._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
11._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
12._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
13._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
14._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
15._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
16._RUQ_6
_AA-CTTT___X_XX_XX_XX_XX_XX_X
17._EET_272_[ECU]
_AA_CTTTTT__X_XX_XX_XX_XX_XX_X
18._RUQ_6
__CT_TT___X_XX_XX_XX_XX_XX_X
19._GC-03-032-3-11
TTAACCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
20._GC-03-032-3-11
TTAACCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
21._EET_272_[ECU]
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
22._EET_272_[ECU]
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
23._RUQ_6
AA__AGAAAAATGGX_XX_XX_XX_XX_XX_X
24._MITC-000381
AA__AGAAAAATGGX_XX_XX_XX_XX_XX_X
25._GC-03-32-3-11
AA__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

1._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

12._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

13._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

14._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

15._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

16._EET_272_[ECU] RUQ_6

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_272_[ECU]

95 %
30 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

18._EET_272_[ECU] RUQ_6

87.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._EET_272_[ECU] GC-03-032-3-11

73.1 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

72.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._EET_272_[ECU]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

22._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._EET_272_[ECU] RUQ_6

50 %
78 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

50 %
78 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

35.3 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240