SNP Profiles of EET-272   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
9._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
10._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
11._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
12._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
13._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
14._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
15._EET_272_[ECU]
AAAACTAA____CTCCGG_CT_
16._RUQ_6
__CTAA__TT_CT__TTTT_
17._EET_272_[ECU]
AAAACTAA____CT_AG_CT_
18._RUQ_6
______TT_______
19._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
20._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
21._EET_272_[ECU]
AAACCCCC____CCCCGG_CC_
22._EET_272_[ECU]
AAACCCCC____CCCCGG_CC_
23._RUQ_6
AAAA_AAGGGG_GGAG_GGAAAGAA
24._MITC-000381
AAAA_AAGGGG_GGAG_GGAAAGAA
25._GC-03-32-3-11
AAAC_CCGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCTAATTGGTTAACCCC
1._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
2._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
3._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
4._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
8._EET_272_[ECU]
__GG__GG____TTAA_CC
9._EET_272_[ECU]
__GG__GG____TTAA_CC
10._EET_272_[ECU]
__GG__GG____TTAA_CC
11._EET_272_[ECU]
__GG__GG____TTAA_CC
12._EET_272_[ECU]
__GG__GG____TTAA_CC
13._EET_272_[ECU]
__GG__GG____TTAA_CC
14._EET_272_[ECU]
__GG__GG____TTAA_CC
15._EET_272_[ECU]
__GG__GG____TTAA_CC
16._RUQ_6
____CC____GG_AACCCC
17._EET_272_[ECU]
_____GG________
18._RUQ_6
__GGTT_________CC
19._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
20._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
21._EET_272_[ECU]
__AG__CC____ATAA_GG
22._EET_272_[ECU]
__AG__CC____ATAA_GG
23._RUQ_6
TTAAGGCC_GGAGAAAAGGTTAAGGGG
24._MITC-000381
TTAAGGCC_GGAGAAAAGGTTAAGGGG
25._GC-03-32-3-11
TTCCAGCG_CCAAAGAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAGGGGGTTAACCGGCC
1._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
2._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
3._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
4._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._EET_272_[ECU]
AA___GG_AGGG__AA___
9._EET_272_[ECU]
AA___GG_AGGG__AA___
10._EET_272_[ECU]
AA___GG_AGGG__AA___
11._EET_272_[ECU]
AA___GG_AGGG__AA___
12._EET_272_[ECU]
AA___GG_AGGG__AA___
13._EET_272_[ECU]
AA___GG_AGGG__AA___
14._EET_272_[ECU]
AA___GG_AGGG__AA___
15._EET_272_[ECU]
AA___GG_AGGG__AA___
16._RUQ_6
___GGGGCCAGGG__AACC__
17._EET_272_[ECU]
AA_____AG___AA___
18._RUQ_6
____GG_AG____CC__
19._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
20._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
21._EET_272_[ECU]
AA___CG_AGGG__GG___
22._EET_272_[ECU]
AA___CG_AGGG__GG___
23._RUQ_6
AAAACCGGGGCCAGCCCCAAAAGGGGGG
24._MITC-000381
AAAACCGGGGCCAGCCCCAAAAGGGGGG
25._GC-03-32-3-11
AAAAACGGCGCCAGCCCCAAGGAGAGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCACGGGGGGTTCTCC
1._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
2._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
3._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
4._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
5._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
6._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
7._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGG_CTCC
8._EET_272_[ECU]
__TT_________CTCC
9._EET_272_[ECU]
__TT_________CTCC
10._EET_272_[ECU]
__TT_________CTCC
11._EET_272_[ECU]
__TT_________CTCC
12._EET_272_[ECU]
__TT_________CTCC
13._EET_272_[ECU]
__TT_________CTCC
14._EET_272_[ECU]
__TT_________CTCC
15._EET_272_[ECU]
__TT_________CTCC
16._RUQ_6
GGTT__AG______TTCT_
17._EET_272_[ECU]
____________CTCT
18._RUQ_6
____AG_________
19._GC-03-032-3-11
GGTTCTAAGGAACC_GGAAGGTTCCCT
20._GC-03-032-3-11
GGTTCTAAGGAACCCCGGAAGGTTCCCT
21._EET_272_[ECU]
__CT_________CCCT
22._EET_272_[ECU]
__CT_________CCCT
23._RUQ_6
CC_AA_AGAAGG_GGGGCCAAAGGG
24._MITC-000381
CC_AA_AGAAGG_GGGGCCAAAGGG
25._GC-03-32-3-11
CC_AG_GGAAGG_GGAACCAAGGAG
 5758596061626364656667686970
_Input profile
TTGGCCCCTTAAGGGGACAAGTGGGGTT
1._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
2._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
3._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
4._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
5._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
6._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
7._GC-03-032-3-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
8._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
9._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
10._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
11._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
12._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
13._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
14._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
15._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
16._RUQ_6
TT-CCCCTTAA_GGACAAGTGGGG_
17._EET_272_[ECU]
__CC_TTAAGG_ACAAGTGG__
18._RUQ_6
_GG______ACAA_GGGG_
19._GC-03-032-3-11
TTGGCCCCCCAAGGGGCCAGGTGGAGTT
20._GC-03-032-3-11
TTGGCCCCCC_GGGGCCAGGTGGAGTT
21._EET_272_[ECU]
__CC_CCAAGG_CCAGGTGG__
22._EET_272_[ECU]
__CC_CC_GG_CCAGGTGG__
23._RUQ_6
AAGGGGGGAAAAGGGGACAAACCCGG_
24._MITC-000381
AAGGGGGGAAAAGGGGACAAACCCGG_
25._GC-03-32-3-11
AAGGGGGGGGACGGGGCCAGACCCAG_
 7172737475767778798081828384
_Input profile
CGAACTACAACCCCAACCCCCCAAACCT
1._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
2._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
3._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
4._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
5._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
6._GC-03-032-3-11
CGAACTACAACCCCAACCCCCCAAACCT
7._GC-03-032-3-11
CGAACTAC_CCCCAACCCCCCAAACCT
8._EET_272_[ECU]
_AACT_____CCCC___CT
9._EET_272_[ECU]
_AACT_____CCCC___CT
10._EET_272_[ECU]
_AACT_____CCCC___CT
11._EET_272_[ECU]
_AACT_____CCCC___CT
12._EET_272_[ECU]
_AACT_____CCCC___CT
13._EET_272_[ECU]
_AACT_____CCCC___CT
14._EET_272_[ECU]
_AACT_____CCCC___CT
15._EET_272_[ECU]
_AACT_____CCCC___CT
16._RUQ_6
________CCCC__ACCT
17._EET_272_[ECU]
_AACT__________CT
18._RUQ_6
_AA______ACCC__AC_
19._GC-03-032-3-11
CCAGCTCCAGACCCAAACGGCCTTAATT
20._GC-03-032-3-11
CCAGCTCCAGACCCAAACGGCCTTAATT
21._EET_272_[ECU]
_AGCT_____ACGG___TT
22._EET_272_[ECU]
_AGCT_____ACGG___TT
23._RUQ_6
__AGACAACCCC_CCGGGGAAACAG
24._MITC-000381
__AGACAACCCC_CCGGGGAAACAG
25._GC-03-32-3-11
__AGCCAGACCC_ACCCGGTTAAAA
 85868788899091929394    
_Input profile
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
1._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
2._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
3._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
4._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
5._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
6._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
7._GC-03-032-3-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
8._EET_272_[ECU]
CTCC_AA_CTTTTT__X_XX_XX_XX_X
9._EET_272_[ECU]
CTCC_AA_CTTTTT__X_XX_XX_XX_X
10._EET_272_[ECU]
CTCC_AA_CTTTTT__X_XX_XX_XX_X
11._EET_272_[ECU]
CTCC_AA_CTTTTT__X_XX_XX_XX_X
12._EET_272_[ECU]
CTCC_AA_CTTTTT__X_XX_XX_XX_X
13._EET_272_[ECU]
CTCC_AA_CTTTTT__X_XX_XX_XX_X
14._EET_272_[ECU]
CTCC_AA_CTTTTT__X_XX_XX_XX_X
15._EET_272_[ECU]
CTCC_AA_CTTTTT__X_XX_XX_XX_X
16._RUQ_6
___AA-CTTT___X_XX_XX_XX_X
17._EET_272_[ECU]
CTCT_AA_CTTTTT__X_XX_XX_XX_X
18._RUQ_6
_CC__CT_TT___X_XX_XX_XX_X
19._GC-03-032-3-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
20._GC-03-032-3-11
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
21._EET_272_[ECU]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
22._EET_272_[ECU]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
23._RUQ_6
AG_AA__AGAAAAATGGX_XX_XX_XX_X
24._MITC-000381
AG_AA__AGAAAAATGGX_XX_XX_XX_X
25._GC-03-32-3-11
AG_AA__GGAAAATTGGX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

12._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

13._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

14._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

15._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

16._EET_272_[ECU] RUQ_6

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_272_[ECU]

95 %
30 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

18._EET_272_[ECU] RUQ_6

87.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._EET_272_[ECU] GC-03-032-3-11

73.1 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._EET_272_[ECU]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

22._EET_272_[ECU]

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._EET_272_[ECU] RUQ_6

50 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

50 %
80 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240