SNP Profiles of POUND-7B View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
1._GC-01-114-6-11	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
2._GC-01-114-6-11	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
3._GC-01-114-6-11	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
4._GC-01-114-6-11	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
5._GC-01-114-6-11	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
6._GC-01-114-6-11	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
7._GC-01-114-6-11	AA	AA	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
8._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
9._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
10._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
11._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
12._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
13._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
14._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
15._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
16._POUND_7_/B	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
17._RUQ_24	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
18._RUQ_24	_	_	CT	AA	_	_	TT	_	CT	_	_	TT	-	_
19._RUQ_24	AA	AA	_	AA	GG	GG	_	GG	AG	_	GG	AA	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	GG	CC	GG	CT	AA	GG	TT	AA	CC	CC	AA
1._GC-01-114-6-11	AA	AA	GG	GG	CC	GG	CT	AA	GG	TT	AA	CC	CC	AA
2._GC-01-114-6-11	AA	AA	GG	GG	CC	GG	CT	AA	GG	TT	AA	CC	CC	AA
3._GC-01-114-6-11	AA	AA	GG	GG	CC	GG	CT	AA	GG	TT	AA	CC	CC	AA
4._GC-01-114-6-11	AA	AA	GG	GG	CC	GG	CT	AA	GG	TT	AA	CC	CC	AA
5._GC-01-114-6-11	AA	AA	GG	GG	CC	GG	CT	AA	GG	TT	AA	CC	CC	AA
6._GC-01-114-6-11	AA	AA	GG	GG	CC	GG	CT	AA	GG	TT	AA	CC	CC	AA
7._GC-01-114-6-11	AA	AA	GG	GG	CC	GG	CT	AA	GG	TT	AA	CC	CC	AA
8._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
9._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
10._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
11._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
12._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
13._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
14._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
15._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
16._POUND_7_/B	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
17._RUQ_24	_	_	GG	_	_	GG	_	_	_	TT	AA	_	CC	AA
18._RUQ_24	_	_	_	_	CC	_	_	_	GG	_	AA	CC	CC	_
19._RUQ_24	TT	AA	GG	CC	_	GG	AG	AA	GG	TT	AA	GG	GG	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
1._GC-01-114-6-11	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
2._GC-01-114-6-11	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
3._GC-01-114-6-11	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
4._GC-01-114-6-11	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
5._GC-01-114-6-11	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
6._GC-01-114-6-11	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
7._GC-01-114-6-11	TT	GG	GG	GG	CC	AG	GG	GG	TT	AA	CC	GG	CC	GG
8._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
9._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
10._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
11._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
12._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
13._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
14._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
15._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
16._POUND_7_/B	_	_	_	GG	_	AG	GG	_	_	AA	_	_	_	_
17._RUQ_24	_	_	_	GG	_	AG	GG	_	_	AG	_	_	_	_
18._RUQ_24	_	_	GG	GG	CC	AG	GG	_	_	AA	CC	_	_	GG
19._RUQ_24	AA	CC	GG	GG	CC	AG	CC	CC	AA	AA	GG	GG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	TT	AG	AG	AA	CC	AC	GG	GG	GG	TT	CT	CC	TT
1._GC-01-114-6-11	TT	TT	AG	AG	AA	CC	AC	GG	GG	GG	TT	CT	CC	TT
2._GC-01-114-6-11	TT	TT	AG	AG	AA	CC	AC	GG	GG	GG	TT	CT	CC	TT
3._GC-01-114-6-11	TT	TT	AG	AG	AA	CC	AC	GG	GG	GG	TT	CT	CC	TT
4._GC-01-114-6-11	TT	TT	AG	AG	AA	CC	AC	GG	GG	GG	TT	CT	CC	TT
5._GC-01-114-6-11	TT	TT	AG	AG	AA	CC	AC	GG	GG	GG	TT	CT	CC	TT
6._GC-01-114-6-11	TT	TT	AG	AG	AA	CC	AC	GG	GG	GG	TT	CT	CC	TT
7._GC-01-114-6-11	TT	TT	AG	AG	AA	CC	AC	GG	GG	GG	TT	CT	CC	TT
8._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
9._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
10._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
11._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
12._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
13._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
14._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
15._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
16._POUND_7_/B	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
17._RUQ_24	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
18._RUQ_24	TT	_	_	AG	_	_	_	_	_	_	TT	CT	_	TT
19._RUQ_24	_	AA	_	AG	AA	GG	_	GG	GG	CC	AA	AG	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CC	TT	AA	GG	GG	AC	AA	GT	GG	GG	TT	CG
1._GC-01-114-6-11	GG	CC	CC	TT	AA	GG	GG	AC	AA	GT	GG	GG	TT	CG
2._GC-01-114-6-11	GG	CC	CC	TT	AA	GG	GG	AC	AA	GT	GG	GG	TT	CG
3._GC-01-114-6-11	GG	CC	CC	TT	AA	GG	GG	AC	AA	GT	GG	GG	TT	CG
4._GC-01-114-6-11	GG	CC	CC	TT	AA	GG	GG	AC	AA	GT	GG	GG	TT	CG
5._GC-01-114-6-11	GG	CC	CC	TT	AA	GG	GG	AC	AA	GT	GG	GG	TT	CG
6._GC-01-114-6-11	GG	CC	CC	TT	AA	GG	GG	AC	AA	GT	GG	GG	TT	CG
7._GC-01-114-6-11	GG	CC	CC	TT	AA	GG	GG	AC	AA	GT	GG	GG	TT	CG
8._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
9._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
10._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
11._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
12._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
13._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
14._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
15._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
16._POUND_7_/B	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
17._RUQ_24	_	CC	_	TT	AA	GG	_	AC	AA	GT	GG	_	_	_
18._RUQ_24	-	CC	CC	TT	AA	_	GG	AC	AA	GT	GG	GG	_	_
19._RUQ_24	GG	GG	GG	AA	AA	GG	GG	AC	AA	AC	CC	GG	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	CT	AC	AA	CC	CC	AA	CC	CC	CC	AA	AC	CT	CT
1._GC-01-114-6-11	AA	CT	AC	AA	CC	CC	AA	CC	CC	CC	AA	AC	CT	CT
2._GC-01-114-6-11	AA	CT	AC	AA	CC	CC	AA	CC	CC	CC	AA	AC	CT	CT
3._GC-01-114-6-11	AA	CT	AC	AA	CC	CC	AA	CC	CC	CC	AA	AC	CT	CT
4._GC-01-114-6-11	AA	CT	AC	AA	CC	CC	AA	CC	CC	CC	AA	AC	CT	CT
5._GC-01-114-6-11	AA	CT	AC	AA	CC	CC	AA	CC	CC	CC	AA	AC	CT	CT
6._GC-01-114-6-11	AA	CT	AC	AA	CC	CC	AA	CC	CC	CC	AA	AC	CT	CT
7._GC-01-114-6-11	AA	CT	AC	_	CC	CC	AA	CC	CC	CC	AA	AC	CT	CT
8._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
9._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
10._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
11._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
12._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
13._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
14._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
15._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
16._POUND_7_/B	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
17._RUQ_24	AA	CT	_	_	_	_	_	CC	CC	_	_	_	CT	CT
18._RUQ_24	_	_	_	_	_	_	_	CC	CC	_	_	AC	CT	_
19._RUQ_24	_	AG	AC	AA	CC	CC	_	CC	GG	GG	AA	AC	AG	AG

	85	86	87	88	89	90	91	92	93
_Input profile	CC	TT	AA	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-01-114-6-11	CC	TT	AA	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
2._GC-01-114-6-11	CC	TT	AA	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
3._GC-01-114-6-11	CC	TT	AA	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
4._GC-01-114-6-11	CC	TT	AA	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
5._GC-01-114-6-11	CC	TT	AA	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
6._GC-01-114-6-11	CC	TT	AA	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
7._GC-01-114-6-11	CC	TT	AA	CT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
8._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
9._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
10._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
11._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
12._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
13._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
14._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
15._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
16._POUND_7_/B	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
17._RUQ_24	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
18._RUQ_24	_	_	AA	CC	CT	TT	_	_	_	X_X	X_X	X_X	X_X	X_X
19._RUQ_24	_	AA	_	_	AG	AA	AA	AT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: POUND_7_/B GC-01-114-6-11

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

1._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

2._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

3._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

5._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._POUND_7_/B GC-01-114-6-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 13

Dapeng Zhang, 2016

9._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 4 > FP

Dapeng Zhang, 2016

10._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 11 > F

Dapeng Zhang, 2016

11._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 10 > F

Dapeng Zhang, 2016

12._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 1 > FP

Dapeng Zhang, 2016

13._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 9

Dapeng Zhang, 2016

14._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 3

Dapeng Zhang, 2016

15._POUND_7_/B

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1611 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._POUND_7_/B

identical
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F407 T3

Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

98.8 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._POUND_7_/B RUQ_24

96.3 %
41 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._POUND_7_/B RUQ_24

50.6 %
79 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240