SNP Profiles of SCA-5   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
ATCCCCCCAGAATTTTCCTTAATTTTTT
1._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
2._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
3._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
4._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
5._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
6._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
7._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
8._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
9._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
10._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
11._GC-01-092-5-09
ATCCCCCCAGAATTTTCCTTAATTTTTT
12._SCA_5
ATCCCCCC____CCTTAA_TT_
13._SCA_5
ATCCCCCC____CCTTAA_TT_
14._SCA_5
ATCCCCCC____CCTTAA_TT_
15._SCA_5
ATCCCCCC____CCTTAA_TT_
16._SCA_5
ATCCCCCC____CCTTAA_TT_
17._SCA_5
ATCCCCCC____CCTTAA_TT_
18._SCA_5
ATCCCCCC____CCTTAA_TT_
19._SCA_5
ATCCCCCC____CCTTAA_TT_
20._SCA_5
ATCCCCCC____CCTTAA_TT_
21._SCA_5
ATCCCCCC____CCTTAA_TT_
22._SCA_5
ATCCCCCC____CCTTAA_TT_
23._SCA_5
ATCCCCCC____CCTTAA_TT_
24._SCA_5
ATCCCCCC____CCTTAA_TT_
 1516171819202122232425262728
_Input profile
TTACAAGGCCGGCGCCAACCGGAAAAGG
1._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
2._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
3._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
4._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
5._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
6._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
7._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
8._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
9._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
10._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
11._GC-01-092-5-09
TTACAAGGCCGGCGCCAACCGGAAAAGG
12._SCA_5
___GG__CG____AAAA_
13._SCA_5
___GG__CG____AAAA_
14._SCA_5
___GG__CG____AAAA_
15._SCA_5
___GG__CG____AAAA_
16._SCA_5
___GG__CG____AAAA_
17._SCA_5
___GG__CG____AAAA_
18._SCA_5
___GG__CG____AAAA_
19._SCA_5
___GG__CG____AAAA_
20._SCA_5
___GG__CG____AAAA_
21._SCA_5
___GG__CG____AAAA_
22._SCA_5
___GG__CG____AAAA_
23._SCA_5
___GG__CG____AAAA_
24._SCA_5
___GG__CG____AAAA_
 2930313233343536373839404142
_Input profile
CCTTTTTTAGCCCCAAGGTTTTAACCGG
1._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
2._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
3._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
4._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
5._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
6._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
7._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
8._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
9._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
10._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
11._GC-01-092-5-09
CCTTTTTTAGCCCCAAGGTTTTAACCGG
12._SCA_5
CCTT___CC_AAGG__AA__
13._SCA_5
CCTT___CC_AAGG__AA__
14._SCA_5
CCTT___CC_AAGG__AA__
15._SCA_5
CCTT___CC_AAGG__AA__
16._SCA_5
CCTT___CC_AAGG__AA__
17._SCA_5
CCTT___CC_AAGG__AA__
18._SCA_5
CCTT___CC_AAGG__AA__
19._SCA_5
CCTT___CC_AAGG__AA__
20._SCA_5
CCTT___CC_AAGG__AA__
21._SCA_5
CCTT___CC_AAGG__AA__
22._SCA_5
CCTT___CC_AAGG__AA__
23._SCA_5
CCTT___CC_AAGG__AA__
24._SCA_5
CCTT___CC_AAGG__AA__
 4344454647484950515253545556
_Input profile
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
1._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
2._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
3._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
4._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
5._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
6._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
7._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
8._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
9._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
10._GC-01-092-5-09
CCGGTTTTGGAAAGCCCCAAAAGGTTTT
11._GC-01-092-5-09
CCGGTTTTGG_AGCCCCAAAAGGTTTT
12._SCA_5
___TT_________TT
13._SCA_5
___TT_________TT
14._SCA_5
___TT_________TT
15._SCA_5
___TT_________TT
16._SCA_5
___TT_________TT
17._SCA_5
___TT_________TT
18._SCA_5
___TT_________TT
19._SCA_5
___TT_________TT
20._SCA_5
___TT_________TT
21._SCA_5
___TT_________TT
22._SCA_5
___TT_________TT
23._SCA_5
___TT_________TT
24._SCA_5
___TT_________TT
 5758596061626364656667686970
_Input profile
CCTTGGCCCCTTCCCGGGACGGGGGGAA
1._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
2._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
3._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
4._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
5._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
6._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
7._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
8._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
9._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
10._GC-01-092-5-09
CC_GGCCCCTTCCCGGGACGGGGGGAA
11._GC-01-092-5-09
CCTTGGCCCCTTCCCGGGACGGGGGGAA
12._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
13._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
14._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
15._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
16._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
17._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
18._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
19._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
20._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
21._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
22._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
23._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
24._SCA_5
CC__CC_TTCCCG_ACGGGGGG_
 7172737475767778798081828384
_Input profile
CTCCAGCTCCGGCCCCAAAACCCCAACC
1._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
2._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
3._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
4._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
5._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
6._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
7._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
8._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
9._GC-01-092-5-09
CTCCAGCTCCGGCCCCAA_CCCCAACC
10._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
11._GC-01-092-5-09
CTCCAGCTCCGGCCCCAAAACCCCAACC
12._SCA_5
__AGCT_____AACC___
13._SCA_5
__AGCT_____AACC___
14._SCA_5
__AGCT_____AACC___
15._SCA_5
__AGCT_____AACC___
16._SCA_5
__AGCT_____AACC___
17._SCA_5
__AGCT_____AACC___
18._SCA_5
__AGCT_____AACC___
19._SCA_5
__AGCT_____AACC___
20._SCA_5
__AGCT_____AACC___
21._SCA_5
__AGCT_____AACC___
22._SCA_5
__AGCT_____AACC___
23._SCA_5
__AGCT______CC___
24._SCA_5
__GGCT_____AACC___
 8586878889909192939495   
_Input profile
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
1._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
2._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
3._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
4._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
5._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
6._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
7._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
8._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
9._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
10._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
11._GC-01-092-5-09
TTCCCCCCGGCCCTGTCTTTGGX_XX_XX_X
12._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
13._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
14._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
15._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
16._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
17._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
18._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
19._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
20._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
21._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
22._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
23._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X
24._SCA_5
TTCCCC_GG_CTGTCT__X_XX_XX_X

Input profile: SCA_5 GC-01-092-5-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

1._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

3._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

7._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

8._SCA_5 GC-01-092-5-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

9._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._SCA_5 GC-01-092-5-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 13 > F
 Dapeng Zhang, 2016

13._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 4 > FP
 Dapeng Zhang, 2016

14._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 5 > FP
 Dapeng Zhang, 2016

15._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 9 > FP
 Dapeng Zhang, 2016

16._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 15
 Dapeng Zhang, 2016

17._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 14
 Dapeng Zhang, 2016

18._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 12
 Dapeng Zhang, 2016

19._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 11
 Dapeng Zhang, 2016

20._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 10
 Dapeng Zhang, 2016

21._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 6
 Dapeng Zhang, 2016

22._SCA_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._SCA_5

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1509 8
 Dapeng Zhang, 2016

24._SCA_5

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A25 T2
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240