SNP Profiles of EQX-Z   View Data

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 Key

 1234567891011121314
_Input profile
ATAACCCCAGGGTTCCCCCCGGTTCCTT
1._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
2._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
3._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
4._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
5._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
6._GC-01-055-3-10
_AACCCCAGGGTTCCCCCCGGTTCCTT
7._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
8._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
9._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
10._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
11._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
12._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
13._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
14._EQX_/Z_[CHA]
_AACCCC____CCCCGG_CC_
15._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
16._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
17._RUQ_109
__CCCC__CT_CC__TTCC_
18._RUQ_109
ATAACCCC____CCCCAG_CC_
19._RUQ_109
___CC__CT_______
20._EQX_/Z_[CHA]
AACCCTAC____CCCCGG_CC_
21._EQX_/Z_[CHA]
AACCCTAC____CCCCGG_CC_
22._GC-01-055-3-10
AACCCTACGGAACCCCCCCCGGTTCCTT
23._GC-01-055-3-10
AACCCTACGGAACCCCCCCCGGTTCCTT
24._RUQ_109
ATAA_CCAGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAAACGCGCGCCGGCTGGATAACG
1._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
2._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
3._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
4._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
5._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
6._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
7._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
8._EQX_/Z_[CHA]
___AA__CG____ATAA_
9._EQX_/Z_[CHA]
___AA__CG____ATAA_
10._EQX_/Z_[CHA]
___AA__CG____ATAA_
11._EQX_/Z_[CHA]
___AA__CG____ATAA_
12._EQX_/Z_[CHA]
___AA__CG____ATAA_
13._EQX_/Z_[CHA]
___AA__CG____ATAA_
14._EQX_/Z_[CHA]
___AA__CG____ATAA_
15._EQX_/Z_[CHA]
___AA__CG____ATAA_
16._EQX_/Z_[CHA]
___AA__CG____ATAA_
17._RUQ_109
_____CG____GG_-CC
18._RUQ_109
______CG____ATAA_
19._RUQ_109
___AACT_________
20._EQX_/Z_[CHA]
___GG__CG____AAAA_
21._EQX_/Z_[CHA]
___GG__CG____AAAA_
22._GC-01-055-3-10
AACC_GGCCCCCGTTAATTGGAAAACC
23._GC-01-055-3-10
AACC_GGCCCCCGTTAATTGGAAAACC
24._RUQ_109
TTCCAAAACG_CGGGAAAGGGATAACG
 2930313233343536373839404142
_Input profile
CCATTTGTAGCGACAAGTGTGTAGCCGG
1._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
2._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
3._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
4._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
5._GC-01-055-3-10
CCATTTGTAGCGACAA_GTGTAGCCGG
6._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
7._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
8._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
9._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
10._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
11._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
12._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
13._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
14._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
15._EQX_/Z_[CHA]
CCAT___CG_AA___AG__
16._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
17._RUQ_109
CC___AGCGACAAGT__AGCC_
18._RUQ_109
CCAT___CG_AAGT__AG__
19._RUQ_109
CC____CG_AA____CC_
20._EQX_/Z_[CHA]
GGAA___CG_AGGG__GG__
21._EQX_/Z_[CHA]
GGAA___CG_AGGG__GG__
22._GC-01-055-3-10
GGAATTTTGGCGCCAGGGGGGTGGCTGG
23._GC-01-055-3-10
GGAATTTTGGCGCCAGGGGGGTGGCTGG
24._RUQ_109
GGATAAACAGCGACAAACACACAGGGGG
 4344454647484950515253545556
_Input profile
CGGTATCCAGAGAGCTACAGAGGGTTCC
1._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
2._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
3._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
4._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
5._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
6._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
7._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
8._EQX_/Z_[CHA]
___CC_________CC
9._EQX_/Z_[CHA]
___CC_________CC
10._EQX_/Z_[CHA]
___CC_________CC
11._EQX_/Z_[CHA]
___CC_________CC
12._EQX_/Z_[CHA]
___CC_________CC
13._EQX_/Z_[CHA]
___CC_________CC
14._EQX_/Z_[CHA]
___CC_________CC
15._EQX_/Z_[CHA]
___CC_________CC
16._EQX_/Z_[CHA]
___CC_________CC
17._RUQ_109
_GTAT__AG______TTCC
18._RUQ_109
___CC_________CC
19._RUQ_109
_____AG________
20._EQX_/Z_[CHA]
___CC_________CT
21._EQX_/Z_[CHA]
___CC_________CT
22._GC-01-055-3-10
CCGGTTCCAAGGAACCCCGGAGGGTTCT
23._GC-01-055-3-10
CCGGTTCCAAGGAACCCCGGAGGGTTCT
24._RUQ_109
CGAC_GG_AGGGAG_AGAGCCAAGG
 5758596061626364656667686970
_Input profile
CTTTAGCCCTCTACCGGGACAAGGGGAA
1._GC-01-055-3-10
CTTTAGCCCTCTACCGGGACAAGGGGAA
2._GC-01-055-3-10
CTTTAGCCCTCTACCGGGACAAGGGGAA
3._GC-01-055-3-10
CTTTAGCCCTCTACCGGGACAAGGGGAA
4._GC-01-055-3-10
CTTTAGCC_CTACCGGGACAAGGGGAA
5._GC-01-055-3-10
CTTTAGCCCTCTACCGGGACAAGGGGAA
6._GC-01-055-3-10
CTTTAGCCCTCTACCGGGACAAGGGGAA
7._GC-01-055-3-10
CTTTAGCCCTCTACCGGGACAAGGGGAA
8._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
9._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
10._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
11._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
12._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
13._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
14._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
15._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
16._EQX_/Z_[CHA]
CT__CC_CTACCG_ACAAGGGG_
17._RUQ_109
_TT-CCCTCTAC_GGCCAAGGGGAA
18._RUQ_109
CT__CC_CTACCG_ACAAGGGG_
19._RUQ_109
__AG______ACAA_GGAA
20._EQX_/Z_[CHA]
CC__CC_CTAAGG_ACGGGTGG_
21._EQX_/Z_[CHA]
CC__CC_CTAAGG_ACGGGTGG_
22._GC-01-055-3-10
CCTTAGCCTTCTAAGGGGACGGGTGGGG
23._GC-01-055-3-10
CCTTAGCCTTCTAAGGGGACGGGTGGGG
24._RUQ_109
AGAAAGGGAGAGACCGGGACAACCCCAA
 7172737475767778798081828384
_Input profile
CTCGAACCACGGCCCCAGAACCCTAACC
1._GC-01-055-3-10
CTCGAACCACGGCCCCAGAACCCTAACC
2._GC-01-055-3-10
CTCGAACCACGGCCCCAGAACCCTAACC
3._GC-01-055-3-10
CTCGAACCACGGCCCCAGAACCCTAACC
4._GC-01-055-3-10
CTCGAACCACGGCCCCAGAACCCTAACC
5._GC-01-055-3-10
CTCGAACCACGGCCCCAGAACCCTAACC
6._GC-01-055-3-10
CTCGAACCACGGCCCCAGAACCCTAACC
7._GC-01-055-3-10
CTCGAACCACGGCCCCAGAACCCTAACC
8._EQX_/Z_[CHA]
__AACC_____AACC___
9._EQX_/Z_[CHA]
__AACC_____AACC___
10._EQX_/Z_[CHA]
__AACC_____AACC___
11._EQX_/Z_[CHA]
__AACC_____AACC___
12._EQX_/Z_[CHA]
__AACC_____AACC___
13._EQX_/Z_[CHA]
__AACC_____AACC___
14._EQX_/Z_[CHA]
__AACC_____AACC___
15._EQX_/Z_[CHA]
__AACC_____AACC___
16._EQX_/Z_[CHA]
__GGCC_____AACC___
17._RUQ_109
_________AACC__CC
18._RUQ_109
__GGCC_____AACC___
19._RUQ_109
__GG______AACC__CC
20._EQX_/Z_[CHA]
__AGTT_____AACG___
21._EQX_/Z_[CHA]
__AGTT_____AACG___
22._GC-01-055-3-10
CCCCAGTTACAGAAAAAGAACGCCAAAA
23._GC-01-055-3-10
CCCCAGTTACAGAAAAAGAACGCCAAAA
24._RUQ_109
___GGACGGCCCC_AAGGAGAACC
 8586878889909192939495   
_Input profile
CTCCCCCCAACCCCGGCTTTGGX_XX_XX_X
1._GC-01-055-3-10
CTCCCCCCAACCCCGGCTTTGGX_XX_XX_X
2._GC-01-055-3-10
CTCCCCCCAACCCCGGCTTTGGX_XX_XX_X
3._GC-01-055-3-10
CTCCCCCCAACCCCGGCTTTGGX_XX_XX_X
4._GC-01-055-3-10
CTCCCCCCAACCCCGGCTTTGGX_XX_XX_X
5._GC-01-055-3-10
CTCCCCCCAACCCCGGCTTTGGX_XX_XX_X
6._GC-01-055-3-10
CTCCCCCCAACCCCGGCTTTGGX_XX_XX_X
7._GC-01-055-3-10
CTCCCC_AACCCCGGCTTTGGX_XX_XX_X
8._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
9._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
10._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
11._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
12._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
13._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
14._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
15._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
16._EQX_/Z_[CHA]
CTCCCC_AA_CCGGCT__X_XX_XX_X
17._RUQ_109
CT___AACCCCGG___X_XX_XX_X
18._RUQ_109
CTCCCC_AA_CCGGCT__X_XX_XX_X
19._RUQ_109
__CC__CC_GG___X_XX_XX_X
20._EQX_/Z_[CHA]
CTCTCC_AA_CCTTTT__X_XX_XX_X
21._EQX_/Z_[CHA]
CTCTCC_AA_CCTTTT__X_XX_XX_X
22._GC-01-055-3-10
CTCTCCCCAACTCCTTTTATGGX_XX_XX_X
23._GC-01-055-3-10
CTCTCCCCAACTCCTTTTATGGX_XX_XX_X
24._RUQ_109
AGGG_GG__GGCCAGAAGGX_XX_XX_X

Input profile: EQX_/Z_[CHA] GC-01-055-3-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

1._EQX_/Z_[CHA] GC-01-055-3-10

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._EQX_/Z_[CHA] GC-01-055-3-10

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

3._EQX_/Z_[CHA] GC-01-055-3-10

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

4._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

6._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

7._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

8._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 10
 Dapeng Zhang, 2016

9._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 14
 Dapeng Zhang, 2016

11._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 15
 Dapeng Zhang, 2016

12._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 13 > F
 Dapeng Zhang, 2016

13._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 3 > FP
 Dapeng Zhang, 2016

14._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 12 > F
 Dapeng Zhang, 2016

15._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 7 > FP
 Dapeng Zhang, 2016

16._EQX_/Z_[CHA]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 Y9
 Dapeng Zhang, 2016

17._EQX_/Z_[CHA] RUQ_109

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._EQX_/Z_[CHA] RUQ_109

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._EQX_/Z_[CHA] RUQ_109

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

21._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

22._EQX_/Z_[CHA] GC-01-055-3-10

62.2 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._EQX_/Z_[CHA] GC-01-055-3-10

62.2 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._EQX_/Z_[CHA] RUQ_109

51.2 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240