SNP Profiles of EQX-Z   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCAGGGTTCCCCCCGGTTCCTTAA
1._GC-01-055-3-10
AACCCCAGGGTTCCCCCCGGTTCCTTAA
2._GC-01-055-3-10
AACCCCAGGGTTCCCCCCGGTTCCTTAA
3._GC-01-055-3-10
AACCCCAGGGTTCCCCCCGGTTCCTTAA
4._GC-01-055-3-10
AACCCCAGGGTTCCCCCCGGTTCCTTAA
5._GC-01-055-3-10
AACCCCAGGGTTCCCCCCGGTTCCTTAA
6._GC-01-055-3-10
AACCCCAGGGTTCCCCCCGGTTCCTTAA
7._GC-01-055-3-10
AACCCCAGGGTTCCCCCCGGTTCCTTAA
8._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
9._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
10._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
11._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
12._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
13._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
14._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
15._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
16._EQX_/Z_[CHA]
AACCCC____CCCCGG_CC__
17._RUQ_109
_CCCC__CT_CC__TTCC__
18._RUQ_109
AACCCC____CCCCAG_CC__
19._RUQ_109
__CC__CT________
20._EQX_/Z_[CHA]
CCCTAC____CCCCGG_CC__
21._EQX_/Z_[CHA]
CCCTAC____CCCCGG_CC__
22._GC-01-055-3-10
CCCTACGGAACCCCCCCCGGTTCCTTAA
23._GC-01-055-3-10
CCCTACGGAACCCCCCCCGGTTCCTTAA
24._RUQ_109
AA_CCAGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCAAAACGCGCGCCGGCTGGATAACGCC
1._GC-01-055-3-10
CCAAAACGCGCGCCGGCTGGATAACGCC
2._GC-01-055-3-10
CCAAAACGCGCGCCGGCTGGATAACGCC
3._GC-01-055-3-10
CCAAAACGCGCGCCGGCTGGATAACGCC
4._GC-01-055-3-10
CCAAAACGCGCGCCGGCTGGATAACGCC
5._GC-01-055-3-10
CCAAAACGCGCGCCGGCTGGATAACGCC
6._GC-01-055-3-10
CCAAAACGCGCGCCGGCTGGATAACGCC
7._GC-01-055-3-10
CCAAAACGCGCGCCGGCTGGATAACGCC
8._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
9._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
10._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
11._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
12._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
13._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
14._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
15._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
16._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
17._RUQ_109
____CG____GG_-CCCC
18._RUQ_109
_____CG____ATAA_CC
19._RUQ_109
__AACT_________CC
20._EQX_/Z_[CHA]
__GG__CG____AAAA_GG
21._EQX_/Z_[CHA]
__GG__CG____AAAA_GG
22._GC-01-055-3-10
CC_GGCCCCCGTTAATTGGAAAACCGG
23._GC-01-055-3-10
CC_GGCCCCCGTTAATTGGAAAACCGG
24._RUQ_109
CCAAAACG_CGGGAAAGGGATAACGGG
 2930313233343536373839404142
_Input profile
ATTTGTAGCGACAAGTGTGTAGCCGGCG
1._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
2._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
3._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
4._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
5._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
6._GC-01-055-3-10
ATTTGTAGCGACAA_GTGTAGCCGGCG
7._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
8._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
9._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
10._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
11._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
12._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
13._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
14._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
15._EQX_/Z_[CHA]
AT___CG_AA___AG___
16._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
17._RUQ_109
___AGCGACAAGT__AGCC__
18._RUQ_109
AT___CG_AAGT__AG___
19._RUQ_109
____CG_AA____CC__
20._EQX_/Z_[CHA]
AA___CG_AGGG__GG___
21._EQX_/Z_[CHA]
AA___CG_AGGG__GG___
22._GC-01-055-3-10
AATTTTGGCGCCAGGGGGGTGGCTGGCC
23._GC-01-055-3-10
AATTTTGGCGCCAGGGGGGTGGCTGGCC
24._RUQ_109
ATAAACAGCGACAAACACACAGGGGGCG
 4344454647484950515253545556
_Input profile
GTATCCAGAGAGCTACAGAGGGTTCCCT
1._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
2._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
3._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
4._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
5._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
6._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
7._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
8._EQX_/Z_[CHA]
__CC_________CCCT
9._EQX_/Z_[CHA]
__CC_________CCCT
10._EQX_/Z_[CHA]
__CC_________CCCT
11._EQX_/Z_[CHA]
__CC_________CCCT
12._EQX_/Z_[CHA]
__CC_________CCCT
13._EQX_/Z_[CHA]
__CC_________CCCT
14._EQX_/Z_[CHA]
__CC_________CCCT
15._EQX_/Z_[CHA]
__CC_________CCCT
16._EQX_/Z_[CHA]
__CC_________CCCT
17._RUQ_109
GTAT__AG______TTCC_
18._RUQ_109
__CC_________CCCT
19._RUQ_109
____AG_________
20._EQX_/Z_[CHA]
__CC_________CTCC
21._EQX_/Z_[CHA]
__CC_________CTCC
22._GC-01-055-3-10
GGTTCCAAGGAACCCCGGAGGGTTCTCC
23._GC-01-055-3-10
GGTTCCAAGGAACCCCGGAGGGTTCTCC
24._RUQ_109
AC_GG_AGGGAG_AGAGCCAAGGAG
 5758596061626364656667686970
_Input profile
TTAGCCCTCTACCGGGACAAGGGGAACT
1._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
2._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
3._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
4._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
5._GC-01-055-3-10
TTAGCC_CTACCGGGACAAGGGGAACT
6._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
7._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
8._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
9._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
10._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
11._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
12._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
13._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
14._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
15._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
16._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
17._RUQ_109
TT-CCCTCTAC_GGCCAAGGGGAA_
18._RUQ_109
__CC_CTACCG_ACAAGGGG__
19._RUQ_109
_AG______ACAA_GGAA_
20._EQX_/Z_[CHA]
__CC_CTAAGG_ACGGGTGG__
21._EQX_/Z_[CHA]
__CC_CTAAGG_ACGGGTGG__
22._GC-01-055-3-10
TTAGCCTTCTAAGGGGACGGGTGGGGCC
23._GC-01-055-3-10
TTAGCCTTCTAAGGGGACGGGTGGGGCC
24._RUQ_109
AAAGGGAGAGACCGGGACAACCCCAA_
 7172737475767778798081828384
_Input profile
CGAACCACGGCCCCAGAACCCTAACCCT
1._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
2._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
3._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
4._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
5._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
6._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
7._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
8._EQX_/Z_[CHA]
_AACC_____AACC___CT
9._EQX_/Z_[CHA]
_AACC_____AACC___CT
10._EQX_/Z_[CHA]
_AACC_____AACC___CT
11._EQX_/Z_[CHA]
_AACC_____AACC___CT
12._EQX_/Z_[CHA]
_AACC_____AACC___CT
13._EQX_/Z_[CHA]
_AACC_____AACC___CT
14._EQX_/Z_[CHA]
_AACC_____AACC___CT
15._EQX_/Z_[CHA]
_AACC_____AACC___CT
16._EQX_/Z_[CHA]
_GGCC_____AACC___CT
17._RUQ_109
________AACC__CCCT
18._RUQ_109
_GGCC_____AACC___CT
19._RUQ_109
_GG______AACC__CC_
20._EQX_/Z_[CHA]
_AGTT_____AACG___CT
21._EQX_/Z_[CHA]
_AGTT_____AACG___CT
22._GC-01-055-3-10
CCAGTTACAGAAAAAGAACGCCAAAACT
23._GC-01-055-3-10
CCAGTTACAGAAAAAGAACGCCAAAACT
24._RUQ_109
__GGACGGCCCC_AAGGAGAACCAG
 85868788899091929394    
_Input profile
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
1._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
2._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
3._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
4._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
5._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
6._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
7._GC-01-055-3-10
CCCC_AACCCCGGCTTTGGX_XX_XX_XX_X
8._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
9._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
10._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
11._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
12._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
13._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
14._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
15._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
16._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
17._RUQ_109
___AACCCCGG___X_XX_XX_XX_X
18._RUQ_109
CCCC_AA_CCGGCT__X_XX_XX_XX_X
19._RUQ_109
_CC__CC_GG___X_XX_XX_XX_X
20._EQX_/Z_[CHA]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
21._EQX_/Z_[CHA]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
22._GC-01-055-3-10
CTCCCCAACTCCTTTTATGGX_XX_XX_XX_X
23._GC-01-055-3-10
CTCCCCAACTCCTTTTATGGX_XX_XX_XX_X
24._RUQ_109
GG_GG__GGCCAGAAGGX_XX_XX_XX_X

Input profile: EQX_/Z_[CHA] GC-01-055-3-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

1._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

3._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

4._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._EQX_/Z_[CHA] GC-01-055-3-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._EQX_/Z_[CHA] GC-01-055-3-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

7._EQX_/Z_[CHA] GC-01-055-3-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

8._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 10
 Dapeng Zhang, 2016

9._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 14
 Dapeng Zhang, 2016

11._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 15
 Dapeng Zhang, 2016

12._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 12 > F
 Dapeng Zhang, 2016

13._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 13 > F
 Dapeng Zhang, 2016

14._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 3 > FP
 Dapeng Zhang, 2016

15._EQX_/Z_[CHA]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 7 > FP
 Dapeng Zhang, 2016

16._EQX_/Z_[CHA]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 Y9
 Dapeng Zhang, 2016

17._EQX_/Z_[CHA] RUQ_109

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._EQX_/Z_[CHA] RUQ_109

96.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._EQX_/Z_[CHA] RUQ_109

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._EQX_/Z_[CHA]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

21._EQX_/Z_[CHA]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

22._EQX_/Z_[CHA] GC-01-055-3-10

62.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._EQX_/Z_[CHA] GC-01-055-3-10

62.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._EQX_/Z_[CHA] RUQ_109

50.6 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1350 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240