SNP Profiles of EQX-Z   View Data

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 Key

 1234567891011121314
_Input profile
ATAACCCCAGGGTTCCCCCCGGTTCCTT
1._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
2._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
3._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
4._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
5._GC-01-055-3-10
_AACCCCAGGGTTCCCCCCGGTTCCTT
6._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
7._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
8._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
9._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
10._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
11._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
12._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
13._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
14._EQX_/Z_[CHA]
_AACCCC____CCCCGG_CC_
15._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
16._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
17._RUQ_109
__CCCC__CT_CC__TTCC_
18._RUQ_109
ATAACCCC____CCCCAG_CC_
19._RUQ_109
___CC__CT_______
20._EQX_/Z_[CHA]
AACCCTAC____CCCCGG_CC_
21._EQX_/Z_[CHA]
AACCCTAC____CCCCGG_CC_
22._GC-01-055-3-10
AACCCTACGGAACCCCCCCCGGTTCCTT
23._GC-01-055-3-10
AACCCTACGGAACCCCCCCCGGTTCCTT
24._RUQ_109
ATAA_CCAGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAAACGCGCGCCGGCTGGATAACG
1._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
2._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
3._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
4._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
5._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
6._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
7._GC-01-055-3-10
AACCAAAACGCGCGCCGGCTGGATAACG
8._EQX_/Z_[CHA]
___AA__CG____ATAA_
9._EQX_/Z_[CHA]
___AA__CG____ATAA_
10._EQX_/Z_[CHA]
___AA__CG____ATAA_
11._EQX_/Z_[CHA]
___AA__CG____ATAA_
12._EQX_/Z_[CHA]
___AA__CG____ATAA_
13._EQX_/Z_[CHA]
___AA__CG____ATAA_
14._EQX_/Z_[CHA]
___AA__CG____ATAA_
15._EQX_/Z_[CHA]
___AA__CG____ATAA_
16._EQX_/Z_[CHA]
___AA__CG____ATAA_
17._RUQ_109
_____CG____GG_-CC
18._RUQ_109
______CG____ATAA_
19._RUQ_109
___AACT_________
20._EQX_/Z_[CHA]
___GG__CG____AAAA_
21._EQX_/Z_[CHA]
___GG__CG____AAAA_
22._GC-01-055-3-10
AACC_GGCCCCCGTTAATTGGAAAACC
23._GC-01-055-3-10
AACC_GGCCCCCGTTAATTGGAAAACC
24._RUQ_109
TTCCAAAACG_CGGGAAAGGGATAACG
 2930313233343536373839404142
_Input profile
CCATTTGTAGCGACAAGTGTGTAGCCGG
1._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
2._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
3._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
4._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
5._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
6._GC-01-055-3-10
CCATTTGTAGCGACAA_GTGTAGCCGG
7._GC-01-055-3-10
CCATTTGTAGCGACAAGTGTGTAGCCGG
8._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
9._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
10._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
11._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
12._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
13._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
14._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
15._EQX_/Z_[CHA]
CCAT___CG_AA___AG__
16._EQX_/Z_[CHA]
CCAT___CG_AAGT__AG__
17._RUQ_109
CC___AGCGACAAGT__AGCC_
18._RUQ_109
CCAT___CG_AAGT__AG__
19._RUQ_109
CC____CG_AA____CC_
20._EQX_/Z_[CHA]
GGAA___CG_AGGG__GG__
21._EQX_/Z_[CHA]
GGAA___CG_AGGG__GG__
22._GC-01-055-3-10
GGAATTTTGGCGCCAGGGGGGTGGCTGG
23._GC-01-055-3-10
GGAATTTTGGCGCCAGGGGGGTGGCTGG
24._RUQ_109
GGATAAACAGCGACAAACACACAGGGGG
 4344454647484950515253545556
_Input profile
CGGTATCCAGAGAGCTACAGAGGGTTCC
1._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
2._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
3._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
4._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
5._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
6._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
7._GC-01-055-3-10
CGGTATCCAGAGAGCTACAGAGGGTTCC
8._EQX_/Z_[CHA]
___CC_________CC
9._EQX_/Z_[CHA]
___CC_________CC
10._EQX_/Z_[CHA]
___CC_________CC
11._EQX_/Z_[CHA]
___CC_________CC
12._EQX_/Z_[CHA]
___CC_________CC
13._EQX_/Z_[CHA]
___CC_________CC
14._EQX_/Z_[CHA]
___CC_________CC
15._EQX_/Z_[CHA]
___CC_________CC
16._EQX_/Z_[CHA]
___CC_________CC
17._RUQ_109
_GTAT__AG______TTCC
18._RUQ_109
___CC_________CC
19._RUQ_109
_____AG________
20._EQX_/Z_[CHA]
___CC_________CT
21._EQX_/Z_[CHA]
___CC_________CT
22._GC-01-055-3-10
CCGGTTCCAAGGAACCCCGGAGGGTTCT
23._GC-01-055-3-10
CCGGTTCCAAGGAACCCCGGAGGGTTCT
24._RUQ_109
CGAC_GG_AGGGAG_AGAGCCAAGG
 5758596061626364656667686970
_Input profile
CTTTAGCCCTACCGGGACAAGGGGAACT
1._GC-01-055-3-10
CTTTAGCCCTACCGGGACAAGGGGAACT
2._GC-01-055-3-10
CTTTAGCCCTACCGGGACAAGGGGAACT
3._GC-01-055-3-10
CTTTAGCCCTACCGGGACAAGGGGAACT
4._GC-01-055-3-10
CTTTAGCCCTACCGGGACAAGGGGAACT
5._GC-01-055-3-10
CTTTAGCCCTACCGGGACAAGGGGAACT
6._GC-01-055-3-10
CTTTAGCCCTACCGGGACAAGGGGAACT
7._GC-01-055-3-10
CTTTAGCCCTACCGGGACAAGGGGAACT
8._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
9._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
10._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
11._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
12._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
13._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
14._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
15._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
16._EQX_/Z_[CHA]
CT__CCCTACCG_ACAAGGGG__
17._RUQ_109
_TT-CCCTAC_GGCCAAGGGGAA_
18._RUQ_109
CT__CCCTACCG_ACAAGGGG__
19._RUQ_109
__AG_____ACAA_GGAA_
20._EQX_/Z_[CHA]
CC__CCCTAAGG_ACGGGTGG__
21._EQX_/Z_[CHA]
CC__CCCTAAGG_ACGGGTGG__
22._GC-01-055-3-10
CCTTAGCCCTAAGGGGACGGGTGGGGCC
23._GC-01-055-3-10
CCTTAGCCCTAAGGGGACGGGTGGGGCC
24._RUQ_109
AGAAAGGGAGACCGGGACAACCCCAA_
 7172737475767778798081828384
_Input profile
CGAACCACGGCCCCAGAACCCTAACCCT
1._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
2._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
3._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
4._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
5._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
6._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
7._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
8._EQX_/Z_[CHA]
_AACC_____AACC___CT
9._EQX_/Z_[CHA]
_AACC_____AACC___CT
10._EQX_/Z_[CHA]
_AACC_____AACC___CT
11._EQX_/Z_[CHA]
_AACC_____AACC___CT
12._EQX_/Z_[CHA]
_AACC_____AACC___CT
13._EQX_/Z_[CHA]
_AACC_____AACC___CT
14._EQX_/Z_[CHA]
_AACC_____AACC___CT
15._EQX_/Z_[CHA]
_AACC_____AACC___CT
16._EQX_/Z_[CHA]
_GGCC_____AACC___CT
17._RUQ_109
________AACC__CCCT
18._RUQ_109
_GGCC_____AACC___CT
19._RUQ_109
_GG______AACC__CC_
20._EQX_/Z_[CHA]
_AGTT_____AACG___CT
21._EQX_/Z_[CHA]
_AGTT_____AACG___CT
22._GC-01-055-3-10
CCAGTTACAGAAAAAGAACGCCAAAACT
23._GC-01-055-3-10
CCAGTTACAGAAAAAGAACGCCAAAACT
24._RUQ_109
__GGACGGCCCC_AAGGAGAACCAG
 85868788899091929394    
_Input profile
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
1._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
2._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
3._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
4._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
5._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
6._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
7._GC-01-055-3-10
CCCC_AACCCCGGCTTTGGX_XX_XX_XX_X
8._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
9._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
10._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
11._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
12._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
13._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
14._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
15._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
16._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
17._RUQ_109
___AACCCCGG___X_XX_XX_XX_X
18._RUQ_109
CCCC_AA_CCGGCT__X_XX_XX_XX_X
19._RUQ_109
_CC__CC_GG___X_XX_XX_XX_X
20._EQX_/Z_[CHA]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
21._EQX_/Z_[CHA]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
22._GC-01-055-3-10
CTCCCCAACTCCTTTTATGGX_XX_XX_XX_X
23._GC-01-055-3-10
CTCCCCAACTCCTTTTATGGX_XX_XX_XX_X
24._RUQ_109
GG_GG__GGCCAGAAGGX_XX_XX_XX_X

Input profile: EQX_/Z_[CHA] GC-01-055-3-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

3._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

4._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._EQX_/Z_[CHA] GC-01-055-3-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

6._EQX_/Z_[CHA] GC-01-055-3-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

7._EQX_/Z_[CHA] GC-01-055-3-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

8._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 10
 Dapeng Zhang, 2016

9._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 14
 Dapeng Zhang, 2016

11._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 15
 Dapeng Zhang, 2016

12._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 13 > F
 Dapeng Zhang, 2016

13._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 3 > FP
 Dapeng Zhang, 2016

14._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 12 > F
 Dapeng Zhang, 2016

15._EQX_/Z_[CHA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 7 > FP
 Dapeng Zhang, 2016

16._EQX_/Z_[CHA]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 Y9
 Dapeng Zhang, 2016

17._EQX_/Z_[CHA] RUQ_109

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._EQX_/Z_[CHA] RUQ_109

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._EQX_/Z_[CHA] RUQ_109

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

21._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

22._EQX_/Z_[CHA] GC-01-055-3-10

62.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._EQX_/Z_[CHA] GC-01-055-3-10

62.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._EQX_/Z_[CHA] RUQ_109

51.9 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240