SNP Profiles of EQX-Z   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTACGGAACCCCCCCCGGTTCCTT
1._GC-01-055-3-10
AACCCTACGGAACCCCCCCCGGTTCCTT
2._EQX_/Z_[CHA]
AACCCTAC____CCCCGG_CC_
3._EQX_/Z_[CHA]
AACCCTAC____CCCCGG_CC_
4._EQX_/Z_[CHA]
_AACCCC____CCCCGG_CC_
5._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
6._RUQ_109
ATAACCCC____CCCCAG_CC_
7._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
8._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
9._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
10._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
11._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
12._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
13._EQX_/Z_[CHA]
ATAACCCC____CCCCGG_CC_
14._RUQ_109
__CCCC__CT_CC__TTCC_
15._GC-01-055-3-10
_AACCCCAGGGTTCCCCCCGGTTCCTT
16._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
17._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
18._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
19._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
20._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
21._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
22._GC-01-055-3-10
ATAACCCCAGGGTTCCCCCCGGTTCCTT
23._RUQ_109
___CC__CT_______
24._RUQ_109
ATAA_CCAGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCGGCCCCCGTTAATTGGAAAACCGG
1._GC-01-055-3-10
AACCGGCCCCCGTTAATTGGAAAACCGG
2._EQX_/Z_[CHA]
__GG__CG____AAAA_GG
3._EQX_/Z_[CHA]
__GG__CG____AAAA_GG
4._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
5._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
6._RUQ_109
_____CG____ATAA_CC
7._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
8._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
9._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
10._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
11._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
12._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
13._EQX_/Z_[CHA]
__AA__CG____ATAA_CC
14._RUQ_109
____CG____GG_-CCCC
15._GC-01-055-3-10
AACCAACGCGCGCCGGCTGGATAACGCC
16._GC-01-055-3-10
AACCAACGCGCGCCGGCTGGATAACGCC
17._GC-01-055-3-10
AACCAACGCGCGCCGGCTGGATAACGCC
18._GC-01-055-3-10
AACCAACGCGCGCCGGCTGGATAACGCC
19._GC-01-055-3-10
AACCAACGCGCGCCGGCTGGATAACGCC
20._GC-01-055-3-10
AACCAACGCGCGCCGGCTGGATAACGCC
21._GC-01-055-3-10
AACCAACGCGCGCCGGCTGGATAACGCC
22._GC-01-055-3-10
AACCAACGCGCGCCGGCTGGATAACGCC
23._RUQ_109
__AACT_________CC
24._RUQ_109
TTCCAACG_CGGGAAAGGGATAACGGG
 2930313233343536373839404142
_Input profile
AATTTTGGCGCCAGGGGGGTGGCTGGCC
1._GC-01-055-3-10
AATTTTGGCGCCAGGGGGGTGGCTGGCC
2._EQX_/Z_[CHA]
AA___CG_AGGG__GG___
3._EQX_/Z_[CHA]
AA___CG_AGGG__GG___
4._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
5._EQX_/Z_[CHA]
AT___CG_AA___AG___
6._RUQ_109
AT___CG_AAGT__AG___
7._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
8._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
9._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
10._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
11._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
12._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
13._EQX_/Z_[CHA]
AT___CG_AAGT__AG___
14._RUQ_109
___AGCGACAAGT__AGCC__
15._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
16._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
17._GC-01-055-3-10
ATTTGTAGCGACAA_GTGTAGCCGGCG
18._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
19._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
20._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
21._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
22._GC-01-055-3-10
ATTTGTAGCGACAAGTGTGTAGCCGGCG
23._RUQ_109
____CG_AA____CC__
24._RUQ_109
ATAAACAGCGACAAACACACAGGGGGCG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGAGGGTTCTCC
1._GC-01-055-3-10
GGTTCCAAGGAACCCCGGAGGGTTCTCC
2._EQX_/Z_[CHA]
__CC_________CTCC
3._EQX_/Z_[CHA]
__CC_________CTCC
4._EQX_/Z_[CHA]
__CC_________CCCT
5._EQX_/Z_[CHA]
__CC_________CCCT
6._RUQ_109
__CC_________CCCT
7._EQX_/Z_[CHA]
__CC_________CCCT
8._EQX_/Z_[CHA]
__CC_________CCCT
9._EQX_/Z_[CHA]
__CC_________CCCT
10._EQX_/Z_[CHA]
__CC_________CCCT
11._EQX_/Z_[CHA]
__CC_________CCCT
12._EQX_/Z_[CHA]
__CC_________CCCT
13._EQX_/Z_[CHA]
__CC_________CCCT
14._RUQ_109
GTAT__AG______TTCC_
15._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
16._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
17._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
18._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
19._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
20._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
21._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
22._GC-01-055-3-10
GTATCCAGAGAGCTACAGAGGGTTCCCT
23._RUQ_109
____AG_________
24._RUQ_109
AC_GG_AGGGAG_AGAGCCAAGGAG
 5758596061626364656667686970
_Input profile
TTAGCCTTCTAAGGGGACGGGTGGGGCC
1._GC-01-055-3-10
TTAGCCTTCTAAGGGGACGGGTGGGGCC
2._EQX_/Z_[CHA]
__CC_CTAAGG_ACGGGTGG__
3._EQX_/Z_[CHA]
__CC_CTAAGG_ACGGGTGG__
4._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
5._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
6._RUQ_109
__CC_CTACCG_ACAAGGGG__
7._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
8._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
9._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
10._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
11._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
12._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
13._EQX_/Z_[CHA]
__CC_CTACCG_ACAAGGGG__
14._RUQ_109
TT-CCCTCTAC_GGCCAAGGGGAA_
15._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
16._GC-01-055-3-10
TTAGCC_CTACCGGGACAAGGGGAACT
17._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
18._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
19._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
20._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
21._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
22._GC-01-055-3-10
TTAGCCCTCTACCGGGACAAGGGGAACT
23._RUQ_109
_AG______ACAA_GGAA_
24._RUQ_109
AAAGGGAGAGACCGGGACAACCCCAA_
 7172737475767778798081828384
_Input profile
CCAGTTACAGAAAAAGAACGCCAAAACT
1._GC-01-055-3-10
CCAGTTACAGAAAAAGAACGCCAAAACT
2._EQX_/Z_[CHA]
_AGTT_____AACG___CT
3._EQX_/Z_[CHA]
_AGTT_____AACG___CT
4._EQX_/Z_[CHA]
_AACC_____AACC___CT
5._EQX_/Z_[CHA]
_AACC_____AACC___CT
6._RUQ_109
_GGCC_____AACC___CT
7._EQX_/Z_[CHA]
_AACC_____AACC___CT
8._EQX_/Z_[CHA]
_AACC_____AACC___CT
9._EQX_/Z_[CHA]
_AACC_____AACC___CT
10._EQX_/Z_[CHA]
_AACC_____AACC___CT
11._EQX_/Z_[CHA]
_AACC_____AACC___CT
12._EQX_/Z_[CHA]
_AACC_____AACC___CT
13._EQX_/Z_[CHA]
_GGCC_____AACC___CT
14._RUQ_109
________AACC__CCCT
15._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
16._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
17._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
18._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
19._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
20._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
21._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
22._GC-01-055-3-10
CGAACCACGGCCCCAGAACCCTAACCCT
23._RUQ_109
_GG______AACC__CC_
24._RUQ_109
__GGACGGCCCC_AAGGAGAACCAG
 85868788899091929394    
_Input profile
CTCCCCAACTCCTTTTATGGX_XX_XX_XX_X
1._GC-01-055-3-10
CTCCCCAACTCCTTTTATGGX_XX_XX_XX_X
2._EQX_/Z_[CHA]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
3._EQX_/Z_[CHA]
CTCC_AA_CCTTTT__X_XX_XX_XX_X
4._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
5._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
6._RUQ_109
CCCC_AA_CCGGCT__X_XX_XX_XX_X
7._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
8._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
9._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
10._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
11._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
12._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
13._EQX_/Z_[CHA]
CCCC_AA_CCGGCT__X_XX_XX_XX_X
14._RUQ_109
___AACCCCGG___X_XX_XX_XX_X
15._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
16._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
17._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
18._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
19._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
20._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
21._GC-01-055-3-10
CCCCCCAACCCCGGCTTTGGX_XX_XX_XX_X
22._GC-01-055-3-10
CCCC_AACCCCGGCTTTGGX_XX_XX_XX_X
23._RUQ_109
_CC__CC_GG___X_XX_XX_XX_X
24._RUQ_109
GG_GG__GGCCAGAAGGX_XX_XX_XX_X

Input profile: EQX_/Z_[CHA] GC-01-055-3-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._EQX_/Z_[CHA] GC-01-055-3-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

3._EQX_/Z_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

4._EQX_/Z_[CHA]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 12 > F
 Dapeng Zhang, 2016

5._EQX_/Z_[CHA]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 7 > FP
 Dapeng Zhang, 2016

6._EQX_/Z_[CHA] RUQ_109

64.1 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 10
 Dapeng Zhang, 2016

8._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 14
 Dapeng Zhang, 2016

10._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 15
 Dapeng Zhang, 2016

11._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 13 > F
 Dapeng Zhang, 2016

12._EQX_/Z_[CHA]

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 3 > FP
 Dapeng Zhang, 2016

13._EQX_/Z_[CHA]

63.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 Y9
 Dapeng Zhang, 2016

14._EQX_/Z_[CHA] RUQ_109

63.4 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._EQX_/Z_[CHA] GC-01-055-3-10

62.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

16._EQX_/Z_[CHA] GC-01-055-3-10

62.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._EQX_/Z_[CHA] GC-01-055-3-10

62.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

18._EQX_/Z_[CHA] GC-01-055-3-10

62.2 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._EQX_/Z_[CHA] GC-01-055-3-10

62.2 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

20._EQX_/Z_[CHA] GC-01-055-3-10

62.2 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

21._EQX_/Z_[CHA] GC-01-055-3-10

62.2 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

22._EQX_/Z_[CHA] GC-01-055-3-10

61.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

23._EQX_/Z_[CHA] RUQ_109

50 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._EQX_/Z_[CHA] RUQ_109

33.1 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240