SNP Profiles of RB-37   View Data

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 Key

 1234567891011121314
_Input profile
AAAACCACGGAATTCCCCCTGGTTTTCT
1._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
2._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
3._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
4._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
5._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
6._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
7._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
8._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
9._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
10._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
11._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
12._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
13._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
14._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
15._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
16._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
17._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
18._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
19._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
20._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
21._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
22._RB_37_[BRA]
AAAACCCC____CTTT__TT_
23._RB_37_[BRA]
AAAACCCC____CTTTGG_TT_
24._RUQ_135
AAAACCCC____CTCTGG_CT_
25._RUQ_1705
___CC__CC_______
26._GC-01-43-2-20
AAAA_ACGGAA_GGGG_GGAAAAAG
27._GC-01-43-2-20
AA__ACGGAA_GGGG_GGAAAAAG
 1516171819202122232425262728
_Input profile
TTACAAGGGGCCGGCCAATTGGAAAAGG
1._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
2._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
3._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
4._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
5._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
6._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
7._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
8._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
9._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
10._RB_37_[BRA]
___GG__GG____AAAA_
11._RB_37_[BRA]
___GG__GG____AAAA_
12._RB_37_[BRA]
___GG__GG____AAAA_
13._RB_37_[BRA]
___GG__GG____AAAA_
14._RB_37_[BRA]
___GG__GG____AAAA_
15._RB_37_[BRA]
___GG__GG____AAAA_
16._RB_37_[BRA]
___GG__GG____AAAA_
17._RB_37_[BRA]
___GG__GG____AAAA_
18._RB_37_[BRA]
___GG__GG____AAAA_
19._RB_37_[BRA]
___GG__GG____AAAA_
20._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
21._RB_37_[BRA]
___GG__GG____AAAA_
22._RB_37_[BRA]
___GG__CG____AAAA_
23._RB_37_[BRA]
___GG__CG____AAAA_
24._RUQ_135
___GG__CG____AAAA_
25._RUQ_1705
___GGTT_________
26._GC-01-43-2-20
AAACAAGGCC_GGGGAAAAGGAAAACC
27._GC-01-43-2-20
AAACAAGGCC_GGGGAAAAGGAAAACC
 2930313233343536373839404142
_Input profile
GGAATTGTGGGGCCAAGGGGGGAACCGG
1._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
2._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
3._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
4._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
5._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
6._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
7._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
8._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACC_
9._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
10._RB_37_[BRA]
GGAA___GG_AAGG__AA__
11._RB_37_[BRA]
GGAA___GG_AAGG__AA__
12._RB_37_[BRA]
GGAA___GG_AAGG__AA__
13._RB_37_[BRA]
GGAA___GG_AAGG__AA__
14._RB_37_[BRA]
GGAA___GG_AAGG__AA__
15._RB_37_[BRA]
GGAA___GG_AAGG__AA__
16._RB_37_[BRA]
GGAA___GG_AAGG__AA__
17._RB_37_[BRA]
GGAA___GG_AAGG__AA__
18._RB_37_[BRA]
GGAA___GG_AAGG__AA__
19._RB_37_[BRA]
GGAA___GG_AAGG__AA__
20._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCGG
21._RB_37_[BRA]
GGAA___GG_AAGG__AA__
22._RB_37_[BRA]
GGAA___GG_AAGG__AA__
23._RB_37_[BRA]
GGAA___GG_AAGG__AA__
24._RUQ_135
GGAA___GG_AAGG__AG__
25._RUQ_1705
GG____GG_AA____CC_
26._GC-01-43-2-20
CCAAAAACGGCGCCAACCCCCCAAGGGG
27._GC-01-43-2-20
CCAAAAACGGCGCCAACCCCCCAAGGGG
 4344454647484950515253545556
_Input profile
CCGGTTTTAAAGGGCCACGGAAGTTTTT
1._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
2._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
3._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
4._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
5._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
6._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
7._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
8._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
9._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
10._RB_37_[BRA]
___TT_________TT
11._RB_37_[BRA]
___TT_________TT
12._RB_37_[BRA]
___TT_________TT
13._RB_37_[BRA]
___TT_________TT
14._RB_37_[BRA]
___TT_________TT
15._RB_37_[BRA]
___TT_________TT
16._RB_37_[BRA]
___TT_________TT
17._RB_37_[BRA]
___TT_________TT
18._RB_37_[BRA]
___TT_________TT
19._RB_37_[BRA]
___TT_________TT
20._GC-01-043-2-20
CCGGTTTTAAAGGGCCACGGAAGTTTTT
21._RB_37_[BRA]
___TT_________TT
22._RB_37_[BRA]
___TT__________
23._RB_37_[BRA]
___TT_________CC
24._RUQ_135
___TT_________CC
25._RUQ_1705
_____AG________
26._GC-01-43-2-20
GGCC_AA_AGAAGG_GGAAACAGAA
27._GC-01-43-2-20
GGCC_AA_AGAAGG_GGAAACAGAA
 5758596061626364656667686970
_Input profile
CCTTAGGGCCCCCCGGGGCCAAGGGGAA
1._GC-01-043-2-20
CCTTAGGGCCCCCCGGGGCCAAGGGGAA
2._GC-01-043-2-20
CCTTAGGGCCCCCCGGGGCCAAGGGGAA
3._GC-01-043-2-20
CCTTAGGGCCCCCCGGGGCCAAGGGGAA
4._GC-01-043-2-20
CCTTAGGGCCCCCCGGGGCCAAGGGGAA
5._GC-01-043-2-20
CCTTAGGGCCCCCCGGGGCCAAGGGGAA
6._GC-01-043-2-20
CCTTAGGGCCCCCCGGGGCCAAGGGGAA
7._GC-01-043-2-20
CCTTAGGGCCCC_GGGGCCAAGGGGAA
8._GC-01-043-2-20
CCTTAGGGCCCCCCGGGGCCAAGGGGAA
9._GC-01-043-2-20
CCTT_GGCCCCCCGGGGCCAAGGGGAA
10._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
11._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
12._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
13._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
14._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
15._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
16._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
17._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
18._RB_37_[BRA]
CC__GG_CCCCGG_CCAAGGGG_
19._RB_37_[BRA]
CC__GG_CC_GG_CCAAGGGG_
20._GC-01-043-2-20
CCTTAGGGCCCC_GGGGCCAAGGGGAA
21._RB_37_[BRA]
CC__GG_CC_GG_CCAAGGGG_
22._RB_37_[BRA]
CC____CTCCGG_ACAAGGGG_
23._RB_37_[BRA]
_____CCCCGG_ACAA_GG_
24._RUQ_135
CC__GG_CCCCGG_ACAAGGGG_
25._RUQ_1705
__GG______ACAA_GGAA
26._GC-01-43-2-20
GGAAAGCCGGGGCCGGGGCCAACCCCAA
27._GC-01-43-2-20
GGAAAGCCGGGGCCGGGGCCAACCCCAA
 7172737475767778798081828384
_Input profile
CCGGAATTACGGACCCGGCCCCCCAACC
1._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
2._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
3._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
4._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
5._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
6._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
7._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
8._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
9._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
10._RB_37_[BRA]
__AATT_____CCCC___
11._RB_37_[BRA]
__AATT_____CCCC___
12._RB_37_[BRA]
__AATT_____CCCC___
13._RB_37_[BRA]
__AATT_____CCCC___
14._RB_37_[BRA]
__AATT_____CCCC___
15._RB_37_[BRA]
__AATT_____CCCC___
16._RB_37_[BRA]
__AATT_____CCCC___
17._RB_37_[BRA]
__AATT_____CCCC___
18._RB_37_[BRA]
__AATT_____CCCC___
19._RB_37_[BRA]
__AATT_____CCCC___
20._GC-01-043-2-20
CCGGAATTACGGACCCGGCCCCCCAACC
21._RB_37_[BRA]
__AATT_____CCCC___
22._RB_37_[BRA]
__AACT_____ACCC___
23._RB_37_[BRA]
__AACT_____ACCC___
24._RUQ_135
__AACT_____ACCC___
25._RUQ_1705
__AA______AACC__AC
26._GC-01-43-2-20
___AAACGGACCC_CCGGGGAACC
27._GC-01-43-2-20
___AAACGGACCC_CCGGGGAACC
 8586878889909192939495   
_Input profile
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
1._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
2._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
3._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
4._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
5._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
6._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
7._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
8._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
9._GC-01-043-2-20
CCCCTTTTAGCCTTGGCTATGGX_XX_XX_X
10._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
11._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
12._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
13._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
14._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
15._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
16._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
17._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
18._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
19._RB_37_[BRA]
CCCCTT_AG_TTGGCT__X_XX_XX_X
20._GC-01-043-2-20
CCCCTTTTAGCCCCGGCTATGGX_XX_XX_X
21._RB_37_[BRA]
CCCCTT_AG_CCGGCT__X_XX_XX_X
22._RB_37_[BRA]
CCCC__AA_CTGGCC__X_XX_XX_X
23._RB_37_[BRA]
CCCC____CTGGCC__X_XX_XX_X
24._RUQ_135
CCCCCT_AA_CTGGCC__X_XX_XX_X
25._RUQ_1705
__TT__CC_GG___X_XX_XX_X
26._GC-01-43-2-20
GGGG_AA__AACCAGATGGX_XX_XX_X
27._GC-01-43-2-20
GGGG_AA__AACCAGATGGX_XX_XX_X

Input profile: RB_37_[BRA] GC-01-043-2-20

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

1._RB_37_[BRA] GC-01-043-2-20

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

2._RB_37_[BRA] GC-01-043-2-20

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._RB_37_[BRA] GC-01-043-2-20

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._RB_37_[BRA] GC-01-043-2-20

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

11._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

12._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

13._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

14._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

15._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

16._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

17._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

18._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._RB_37_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

20._RB_37_[BRA] GC-01-043-2-20

98.9 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

22._RB_37_[BRA]

84.7 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

23._RB_37_[BRA]

84.3 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

24._RB_37_[BRA] RUQ_135

82.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._RB_37_[BRA] RUQ_1705

76.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

26._RB_37_[BRA] GC-01-43-2-20

48.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240