SNP Profiles of RB-37   View Data

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 Key

 1234567891011121314
_Input profile
AAAACCACGGAATTCCCCCTGGTTTTCT
1._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
2._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
3._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
4._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
5._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
6._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
7._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
8._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
9._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
10._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
11._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
12._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
13._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
14._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
15._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
16._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
17._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
18._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
19._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
20._GC-01-043-2-20
AAAACCACGGAATTCCCCCTGGTTTTCT
21._RB_37_[BRA]
AAAACCAC____CCCTGG_TT_
22._RB_37_[BRA]
AAAACCCC____CTTT__TT_
23._RB_37_[BRA]
AAAACCCC____CTTTGG_TT_
24._RUQ_135
AAAACCCC____CTCTGG_CT_
25._RUQ_1705
___CC__CC_______
26._GC-01-43-2-20
AAAA_ACGGAA_GGGG_GGAAAAAG
27._GC-01-43-2-20
AA__ACGGAA_GGGG_GGAAAAAG
 1516171819202122232425262728
_Input profile
TTACAAGGGGCCGGCCAATTGGAAAAGG
1._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
2._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
3._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
4._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
5._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
6._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
7._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
8._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
9._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
10._RB_37_[BRA]
___GG__GG____AAAA_
11._RB_37_[BRA]
___GG__GG____AAAA_
12._RB_37_[BRA]
___GG__GG____AAAA_
13._RB_37_[BRA]
___GG__GG____AAAA_
14._RB_37_[BRA]
___GG__GG____AAAA_
15._RB_37_[BRA]
___GG__GG____AAAA_
16._RB_37_[BRA]
___GG__GG____AAAA_
17._RB_37_[BRA]
___GG__GG____AAAA_
18._RB_37_[BRA]
___GG__GG____AAAA_
19._RB_37_[BRA]
___GG__GG____AAAA_
20._GC-01-043-2-20
TTACAAGGGGCCGGCCAATTGGAAAAGG
21._RB_37_[BRA]
___GG__GG____AAAA_
22._RB_37_[BRA]
___GG__CG____AAAA_
23._RB_37_[BRA]
___GG__CG____AAAA_
24._RUQ_135
___GG__CG____AAAA_
25._RUQ_1705
___GGTT_________
26._GC-01-43-2-20
AAACAAGGCC_GGGGAAAAGGAAAACC
27._GC-01-43-2-20
AAACAAGGCC_GGGGAAAAGGAAAACC
 2930313233343536373839404142
_Input profile
GGAATTGTGGGGCCAAGGGGGGAACCCC
1._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
2._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
3._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
4._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
5._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
6._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
7._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
8._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
9._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
10._RB_37_[BRA]
GGAA___GG_AAGG__AA__
11._RB_37_[BRA]
GGAA___GG_AAGG__AA__
12._RB_37_[BRA]
GGAA___GG_AAGG__AA__
13._RB_37_[BRA]
GGAA___GG_AAGG__AA__
14._RB_37_[BRA]
GGAA___GG_AAGG__AA__
15._RB_37_[BRA]
GGAA___GG_AAGG__AA__
16._RB_37_[BRA]
GGAA___GG_AAGG__AA__
17._RB_37_[BRA]
GGAA___GG_AAGG__AA__
18._RB_37_[BRA]
GGAA___GG_AAGG__AA__
19._RB_37_[BRA]
GGAA___GG_AAGG__AA__
20._GC-01-043-2-20
GGAATTGTGGGGCCAAGGGGGGAACCCC
21._RB_37_[BRA]
GGAA___GG_AAGG__AA__
22._RB_37_[BRA]
GGAA___GG_AAGG__AA__
23._RB_37_[BRA]
GGAA___GG_AAGG__AA__
24._RUQ_135
GGAA___GG_AAGG__AG__
25._RUQ_1705
GG____GG_AA____CC_
26._GC-01-43-2-20
CCAAAAACGGCGCCAACCCCCCAAGGGG
27._GC-01-43-2-20
CCAAAAACGGCGCCAACCCCCCAAGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAAGGGCCACGGAAGTTTTTCC
1._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
2._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
3._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
4._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
5._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
6._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
7._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
8._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
9._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
10._RB_37_[BRA]
__TT_________TTCC
11._RB_37_[BRA]
__TT_________TTCC
12._RB_37_[BRA]
__TT_________TTCC
13._RB_37_[BRA]
__TT_________TTCC
14._RB_37_[BRA]
__TT_________TTCC
15._RB_37_[BRA]
__TT_________TTCC
16._RB_37_[BRA]
__TT_________TTCC
17._RB_37_[BRA]
__TT_________TTCC
18._RB_37_[BRA]
__TT_________TTCC
19._RB_37_[BRA]
__TT_________TTCC
20._GC-01-043-2-20
GGTTTTAAAGGGCCACGGAAGTTTTTCC
21._RB_37_[BRA]
__TT_________TTCC
22._RB_37_[BRA]
__TT__________CC
23._RB_37_[BRA]
__TT_________CC_
24._RUQ_135
__TT_________CCCC
25._RUQ_1705
____AG_________
26._GC-01-43-2-20
CC_AA_AGAAGG_GGAAACAGAAGG
27._GC-01-43-2-20
CC_AA_AGAAGG_GGAAACAGAAGG
 5758596061626364656667686970
_Input profile
TTAGGGCCCCCCGGGGCCAAGGGGAACC
1._GC-01-043-2-20
TTAGGGCCCCCCGGGGCCAAGGGGAACC
2._GC-01-043-2-20
TTAGGGCCCCCCGGGGCCAAGGGGAACC
3._GC-01-043-2-20
TTAGGGCCCCCCGGGGCCAAGGGGAACC
4._GC-01-043-2-20
TTAGGGCCCCCCGGGGCCAAGGGGAACC
5._GC-01-043-2-20
TTAGGGCCCCCCGGGGCCAAGGGGAACC
6._GC-01-043-2-20
TTAGGGCCCCCCGGGGCCAAGGGGAACC
7._GC-01-043-2-20
TTAGGGCCCCCCGGGGCCAAGGGGAACC
8._GC-01-043-2-20
TTAGGGCCCC_GGGGCCAAGGGGAACC
9._GC-01-043-2-20
TT_GGCCCCCCGGGGCCAAGGGGAACC
10._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
11._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
12._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
13._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
14._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
15._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
16._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
17._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
18._RB_37_[BRA]
__GG_CCCCGG_CCAAGGGG__
19._RB_37_[BRA]
__GG_CC_GG_CCAAGGGG__
20._GC-01-043-2-20
TTAGGGCCCC_GGGGCCAAGGGGAACC
21._RB_37_[BRA]
__GG_CC_GG_CCAAGGGG__
22._RB_37_[BRA]
____CTCCGG_ACAAGGGG__
23._RB_37_[BRA]
____CCCCGG_ACAA_GG__
24._RUQ_135
__GG_CCCCGG_ACAAGGGG__
25._RUQ_1705
_GG______ACAA_GGAA_
26._GC-01-43-2-20
AAAGCCGGGGCCGGGGCCAACCCCAA_
27._GC-01-43-2-20
AAAGCCGGGGCCGGGGCCAACCCCAA_
 7172737475767778798081828384
_Input profile
GGAATTACGGACCCGGCCCCCCAACCCC
1._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
2._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
3._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
4._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
5._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
6._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
7._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
8._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
9._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
10._RB_37_[BRA]
_AATT_____CCCC___CC
11._RB_37_[BRA]
_AATT_____CCCC___CC
12._RB_37_[BRA]
_AATT_____CCCC___CC
13._RB_37_[BRA]
_AATT_____CCCC___CC
14._RB_37_[BRA]
_AATT_____CCCC___CC
15._RB_37_[BRA]
_AATT_____CCCC___CC
16._RB_37_[BRA]
_AATT_____CCCC___CC
17._RB_37_[BRA]
_AATT_____CCCC___CC
18._RB_37_[BRA]
_AATT_____CCCC___CC
19._RB_37_[BRA]
_AATT_____CCCC___CC
20._GC-01-043-2-20
GGAATTACGGACCCGGCCCCCCAACCCC
21._RB_37_[BRA]
_AATT_____CCCC___CC
22._RB_37_[BRA]
_AACT_____ACCC___CC
23._RB_37_[BRA]
_AACT_____ACCC___CC
24._RUQ_135
_AACT_____ACCC___CC
25._RUQ_1705
_AA______AACC__AC_
26._GC-01-43-2-20
__AAACGGACCC_CCGGGGAACCGG
27._GC-01-43-2-20
__AAACGGACCC_CCGGGGAACCGG
 85868788899091929394    
_Input profile
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
1._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
2._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
3._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
4._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
5._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
6._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
7._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
8._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
9._GC-01-043-2-20
CCTTTTAGCCTTGGCTATGGX_XX_XX_XX_X
10._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
11._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
12._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
13._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
14._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
15._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
16._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
17._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
18._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
19._RB_37_[BRA]
CCTT_AG_TTGGCT__X_XX_XX_XX_X
20._GC-01-043-2-20
CCTTTTAGCCCCGGCTATGGX_XX_XX_XX_X
21._RB_37_[BRA]
CCTT_AG_CCGGCT__X_XX_XX_XX_X
22._RB_37_[BRA]
CC__AA_CTGGCC__X_XX_XX_XX_X
23._RB_37_[BRA]
CC____CTGGCC__X_XX_XX_XX_X
24._RUQ_135
CCCT_AA_CTGGCC__X_XX_XX_XX_X
25._RUQ_1705
_TT__CC_GG___X_XX_XX_XX_X
26._GC-01-43-2-20
GG_AA__AACCAGATGGX_XX_XX_XX_X
27._GC-01-43-2-20
GG_AA__AACCAGATGGX_XX_XX_XX_X

Input profile: RB_37_[BRA] GC-01-043-2-20

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

1._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

3._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

11._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

12._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

13._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

14._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

15._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

16._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

17._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

18._RB_37_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._RB_37_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

20._RB_37_[BRA] GC-01-043-2-20

98.9 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._RB_37_[BRA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

22._RB_37_[BRA]

84.7 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

23._RB_37_[BRA]

84.3 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

24._RB_37_[BRA] RUQ_135

82.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._RB_37_[BRA] RUQ_1705

76.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

26._RB_37_[BRA] GC-01-43-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240