SNP Profiles of RB-39   View Data

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 Key

 1234567891011121314
_Input profile
AAAACCACGGAATTCCTTGGTTTTTTAT
1._GC-01-042-2-19
AAAACCACGGAATTCCTTGGTTTTTTAT
2._GC-01-042-2-19
AAAACCACGGAATTCCTTGGTTTTTTAT
3._GC-01-042-2-19
AAAACCACGGAATTCCTTGGTTTTTTAT
4._GC-01-042-2-19
AAAACCACGGAATTCCTTGGTTTTTTAT
5._GC-01-042-2-19
AAAACCACGGAATTCCTTGGTTTTTTAT
6._GC-01-042-2-19
AAAACCACGGAATTCCTTGGTTTTTTAT
7._GC-01-042-2-19
AAAACCACGGAATTCCTTGGTTTTTTAT
8._RB_39_[BRA]
AAAACCAC____TTGG_TT__
9._RB_39_[BRA]
AAAACCAC____TTGG_TT__
10._RB_39_[BRA]
AAAACCAC____TTGG_TT__
11._RB_39_[BRA]
AAAACCAC____TTGG_TT__
12._RB_39_[BRA]
AAAACCAC____TTGG_TT__
13._RB_39_[BRA]
AAAACCAC____TTGG_TT__
14._RB_39_[BRA]
AAAACCAC____TTGG_TT__
15._RB_39_[BRA]
AAAACCAC____TTGG_TT__
16._RB_39_[BRA]
_AA_AC____TTGG_TT__
17._GC-01-042-2-19
_AA_AC_AATTCCTTGG_TTTTAT
18._RB_39_[BRA]
AAAACCAC____CT__TT__
19._RB_39_[BRA]
AAAACCAC____CTGG_TT__
20._GC-01-042-2-19
AA_CCACGGGGCTCCCCGGTTCCTTAA
21._RB_39_[BRA]
AA_CCAC____CCGG_CC__
22._GC-01-42-2-19
AAAA_ACGGAA_GG_GGAAAAAAAT
 1516171819202122232425262728
_Input profile
ACAAGGCCCCAAGGAAAAGGGGAATTGT
1._GC-01-042-2-19
ACAAGGCCCCAAGGAAAAGGGGAATTGT
2._GC-01-042-2-19
ACAAGGCCCCAAGGAAAAGGGGAATTGT
3._GC-01-042-2-19
ACAAGGCCCCAAGGAAAAGGGGAATTGT
4._GC-01-042-2-19
ACAAGGCCCCAAGGAAAAGGGGAATTGT
5._GC-01-042-2-19
ACAAGGCCCCAAGGAAAAGGGGAATTGT
6._GC-01-042-2-19
ACAAGGCCCCAAGGAAAAGGGGAATTGT
7._GC-01-042-2-19
ACAAGGCCCCAAGGAAAAGGGGAATTGT
8._RB_39_[BRA]
__GG____AAAA_GGAA__
9._RB_39_[BRA]
__GG____AAAA_GGAA__
10._RB_39_[BRA]
__GG____AAAA_GGAA__
11._RB_39_[BRA]
__GG____AAAA_GGAA__
12._RB_39_[BRA]
__GG____AAAA_GGAA__
13._RB_39_[BRA]
__GG____AAAA_GGAA__
14._RB_39_[BRA]
__GG____AAAA_GGAA__
15._RB_39_[BRA]
__GG____AAAA_GGAA__
16._RB_39_[BRA]
__GG____AAAT_GGAA__
17._GC-01-042-2-19
ACAAGGCCCCAAGGAAATGGGGAATTGT
18._RB_39_[BRA]
__GG____AAAA_GGAA__
19._RB_39_[BRA]
__GG____AAAA_GG___
20._GC-01-042-2-19
CC_GGCCTTAAGGAAAACCGGAATTTT
21._RB_39_[BRA]
__GG____AAAA_GGAA__
22._GC-01-42-2-19
ACAAGG_GGAAGGAAAACCCCAAAAAC
 2930313233343536373839404142
_Input profile
GGGGCCAAGGGGGGAACCGGCCGGTTTT
1._GC-01-042-2-19
GGGGCCAAGGGGGGAACCGGCCGGTTTT
2._GC-01-042-2-19
GGGGCCAAGGGGGGAACCGGCCGGTTTT
3._GC-01-042-2-19
GGGGCCAAGGGGGGAACCGGCCGGTTTT
4._GC-01-042-2-19
GGGGCCAAGGGGGGAACCGGCCGGTTTT
5._GC-01-042-2-19
GGGGCCAAGGGGGGAACCGGCCGGTTTT
6._GC-01-042-2-19
GGGGCCAAGGGGGGAACCGGCCGGTTTT
7._GC-01-042-2-19
GGGGCCAAGGGGGGAACCGGCCGGTTTT
8._RB_39_[BRA]
_GG_AAGG__AA_____TT
9._RB_39_[BRA]
_GG_AAGG__AA_____TT
10._RB_39_[BRA]
_GG_AAGG__AA_____TT
11._RB_39_[BRA]
_GG_AAGG__AA_____TT
12._RB_39_[BRA]
_GG_AAGG__AA_____TT
13._RB_39_[BRA]
_GG_AAGG__AA_____TT
14._RB_39_[BRA]
_GG_AAGG__AA_____TT
15._RB_39_[BRA]
_GG_AAGG__AA_____TT
16._RB_39_[BRA]
_GG_AAGG________TT
17._GC-01-042-2-19
AGGGCCAAGGGGGG_CC_CC_ATTT
18._RB_39_[BRA]
_GG_AAGG__AA_____TT
19._RB_39_[BRA]
_GG__GG__AA_____TT
20._GC-01-042-2-19
GGCCCCGGTTGGGGGGCCGGCCGGTTTT
21._RB_39_[BRA]
_CC_GGTT__GG_____TT
22._GC-01-42-2-19
GGCGCCAACCCCCCAAGGGGGGCC_AA
 4344454647484950515253545556
_Input profile
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
1._GC-01-042-2-19
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
2._GC-01-042-2-19
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
3._GC-01-042-2-19
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
4._GC-01-042-2-19
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
5._GC-01-042-2-19
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
6._GC-01-042-2-19
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
7._GC-01-042-2-19
AAAAAGCCGGAAGTTTCTCCTTGGGGCC
8._RB_39_[BRA]
________CTCC__GG_
9._RB_39_[BRA]
________CTCC__GG_
10._RB_39_[BRA]
________CTCC__GG_
11._RB_39_[BRA]
________CTCC__GG_
12._RB_39_[BRA]
________CTCC__GG_
13._RB_39_[BRA]
________CTCC__GG_
14._RB_39_[BRA]
________CTCC__GG_
15._RB_39_[BRA]
________CTCC__GG_
16._RB_39_[BRA]
________CTCC____
17._GC-01-042-2-19
AA__CCGGAA_TTCTCCTTGG_CC
18._RB_39_[BRA]
_________CC____
19._RB_39_[BRA]
________TT_____
20._GC-01-042-2-19
AAGGAACCGGGGTTTTTTCCTTGGCCCC
21._RB_39_[BRA]
________TTCC__CC_
22._GC-01-42-2-19
_AAAAGGGGAAACAGAGGGAAGGCCGG
 5758596061626364656667686970
_Input profile
CCGGGGACAAGGGGAACCCGAATTCCGG
1._GC-01-042-2-19
CCGGGGACAAGGGGAACCCGAATTCCGG
2._GC-01-042-2-19
CCGGGGACAAGGGGAACCCGAATTCCGG
3._GC-01-042-2-19
CCGGGGACAAGGGGAACCCGAATTCCGG
4._GC-01-042-2-19
CCGGGGACAAGGGGAACCCGAATTCCGG
5._GC-01-042-2-19
CCGGGGACAAGGGGAACCCGAATTCCGG
6._GC-01-042-2-19
CCGGGGACAAGGGGAACCCGAATTCCGG
7._GC-01-042-2-19
CCGGGGACAAGGGGAACC_AATTCCGG
8._RB_39_[BRA]
CCGG_ACAAGGGG___AATT__
9._RB_39_[BRA]
CCGG_ACAAGGGG___AATT__
10._RB_39_[BRA]
CCGG_ACAAGGGG___AATT__
11._RB_39_[BRA]
CCGG_ACAAGGGG___AATT__
12._RB_39_[BRA]
CCGG_ACAAGGGG___AATT__
13._RB_39_[BRA]
CCGG_ACAAGGGG___AATT__
14._RB_39_[BRA]
CCGG_ACAAGGGG___AATT__
15._RB_39_[BRA]
CCGG_ACAAGGGG___AATT__
16._RB_39_[BRA]
CCGG_ACAAGGGG____TT__
17._GC-01-042-2-19
CCGGGGACAAGGGGAACCCG_TT_GG
18._RB_39_[BRA]
CCGG_CCAAGGGG___AATT__
19._RB_39_[BRA]
CCGG_CCAA_GG___AATT__
20._GC-01-042-2-19
CCGGGGAAGGGGGGAACCCCAGCCAAGG
21._RB_39_[BRA]
CCGG_AAGGGGGG___AGCC__
22._GC-01-42-2-19
GGGGGG_AACCCCAA___AACCGG
 7172737475767778798081828384
_Input profile
CCCCGGACCCCCAAACCCCCTTTTAGCC
1._GC-01-042-2-19
CCCCGGACCCCCAAACCCCCTTTTAGCC
2._GC-01-042-2-19
CCCCGGACCCCCAAACCCCCTTTTAGCC
3._GC-01-042-2-19
CCCCGGACCCCCAAACCCCCTTTTAGCC
4._GC-01-042-2-19
CCCCGGACCCCCAAACCCCCTTTTAGCC
5._GC-01-042-2-19
CCCCGGACCCCCAAACCCCCTTTTAGCC
6._GC-01-042-2-19
CCCCGGACCCCCAAACCCCCTTTTAGCC
7._GC-01-042-2-19
CCCCGGACCCCCAAACCCCCTTTTAGCC
8._RB_39_[BRA]
___ACCC___CCCCTT_AG_
9._RB_39_[BRA]
___ACCC___CCCCTT_AG_
10._RB_39_[BRA]
___ACCC___CCCCTT_AG_
11._RB_39_[BRA]
___ACCC___CCCCTT_AG_
12._RB_39_[BRA]
___ACCC___CCCCTT_AG_
13._RB_39_[BRA]
___ACCC___CCCCTT_AG_
14._RB_39_[BRA]
___ACCC___CCCCTT_AG_
15._RB_39_[BRA]
___ACCC___CCCCTT_AG_
16._RB_39_[BRA]
___ACCC___CCCCTT_AG_
17._GC-01-042-2-19
CCCCGGACCCCCAAACCCCCTT_AGCC
18._RB_39_[BRA]
___CCCC___CCCC__AG_
19._RB_39_[BRA]
___CCCC___CCCC____
20._GC-01-042-2-19
CCCCGGAACCCCTTAACCCCCCCCGGCC
21._RB_39_[BRA]
___AACC___CCCCCC_GG_
22._GC-01-42-2-19
CCCC_AC_GGAAACGGGG_AA__
 8586878889         
_Input profile
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-042-2-19
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-042-2-19
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-042-2-19
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-042-2-19
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-042-2-19
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-042-2-19
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-042-2-19
CTGGCCAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RB_39_[BRA]
CTGGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
9._RB_39_[BRA]
CTGGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RB_39_[BRA]
CTGGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RB_39_[BRA]
CTGGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RB_39_[BRA]
CTGGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RB_39_[BRA]
CTGGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
14._RB_39_[BRA]
CTGGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
15._RB_39_[BRA]
CTGGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
16._RB_39_[BRA]
_GGCC__X_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-01-042-2-19
_GGCCAA_X_XX_XX_XX_XX_XX_XX_XX_XX_X
18._RB_39_[BRA]
TTGGCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
19._RB_39_[BRA]
TTGGCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-042-2-19
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RB_39_[BRA]
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-42-2-19
AGCCGGTTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: RB_39_[BRA] GC-01-042-2-19

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

1._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

2._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

9._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

10._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

14._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

15._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._RB_39_[BRA]

98.4 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

17._RB_39_[BRA] GC-01-042-2-19

97.9 %
73 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._RB_39_[BRA]

92.4 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._RB_39_[BRA]

90 %
30 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

69 %
87 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

58.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

50 %
74 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP878 19TcSNP413 20TcSNP653
21TcSNP174 22TcSNP32 23TcSNP372 24TcSNP448 25TcSNP872
26TcSNP953 27TcSNP1034 28TcSNP1175 29TcSNP1111 30TcSNP577
31TcSNP90 32TcSNP998 33TcSNP150 34TcSNP28 35TcSNP751
36TcSNP1484 37TcSNP602 38TcSNP561 39TcSNP894 40TcSNP1063
41TcSNP1126 42TcSNP1270 43TcSNP606 44TcSNP329 45TcSNP689
46TcSNP944 47TcSNP1383 48TcSNP547 49TcSNP776 50TcSNP1309
51TcSNP151 52TcSNP1520 53TcSNP799 54TcSNP899 55TcSNP226
56TcSNP1439 57TcSNP1442 58TcSNP25 59TcSNP364 60TcSNP144
61TcSNP230 62TcSNP560 63TcSNP723 64TcSNP731 65TcSNP701
66TcSNP1041 67TcSNP645 68TcSNP917 69Tcm003s01336581 70Tcm003s07402719
71Tcm001s00947643 72Tcm006s26664133 73Tcm002s20575712 74TcSNP529 75TcSNP1458
76TcSNP60 77TcSNP430 78TcSNP823 79TcSNP619 80TcSNP994
81TcSNP1144 82TcSNP1156 83TcSNP469 84TcSNP999 85TcSNP242
86TcSNP1253 87TcSNP1414 88TcSNP154 89TcSNP240