SNP Profiles of UF668 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
1._UF_668	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
2._UF_668	GG	AT	AC	GT	_	AC	AG	CT	_	GG	CC	CT	CC	_
3._UF_668	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
4._UF_668	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
5._UF_668	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
6._UF_668	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
7._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
8._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
9._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
10._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
11._UF_668	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	CC	CT	CC	AC
12._UF_668	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	_	CT	CC	AC
13._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	AG	CT	AT	GG	_	CT	CC	AC
14._UF_668_Fld#_118_Plt#_6	GG	AT	AC	AC	AG	AC	AG	AG	AT	GG	CC	_	CC	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
1._UF_668	CT	AG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
2._UF_668	CT	AG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
3._UF_668	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
4._UF_668	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
5._UF_668	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
6._UF_668	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
7._GC-01-077-4-13	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
8._GC-01-077-4-13	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
9._GC-01-077-4-13	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
10._GC-01-077-4-13	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
11._UF_668	CT	AG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
12._UF_668	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
13._GC-01-077-4-13	CT	GG	GT	CG	CC	TT	GG	CT	AA	AA	CT	GT	CC	AA
14._UF_668_Fld#_118_Plt#_6	AG	_	AC	CG	GG	AA	GG	AG	AA	AA	_	AA	GG	AA

	29	30	31	32
_Input profile	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._UF_668	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._UF_668	TT	CT	CG	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._UF_668	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._UF_668	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._UF_668	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._UF_668	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-077-4-13	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-077-4-13	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-077-4-13	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-077-4-13	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._UF_668	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._UF_668	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-077-4-13	TT	CT	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._UF_668_Fld#_118_Plt#_6	AA	AG	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: UF_668

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

1._UF_668

identical
32 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._UF_668

identical
28 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 8 Row 27 31_33

Dapeng Zhang, 2016

3._UF_668

98.4 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1413 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._UF_668

98.4 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1413 13

Dapeng Zhang, 2016

5._UF_668

98.4 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1413 16 > F

Dapeng Zhang, 2016

6._UF_668

98.4 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1413 5 > FP

Dapeng Zhang, 2016

7._UF_668 GC-01-077-4-13

98.4 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

8._UF_668 GC-01-077-4-13

98.4 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._UF_668 GC-01-077-4-13

98.4 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

10._UF_668 GC-01-077-4-13

98.4 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP4

11._UF_668

98.4 %
32 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

12._UF_668

98.4 %
31 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1413 7 > FP

Dapeng Zhang, 2016

13._UF_668 GC-01-077-4-13

98.4 %
31 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

14._UF_668 UF_668_Fld#_118_Plt#_6

58.6 %
29 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 118, Tree: 6

Notes: TARS_Cacao_collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP529	12	TcSNP534	13	TcSNP577	14	TcSNP591	15	TcSNP619
16	TcSNP645	17	TcSNP723	18	TcSNP872	19	TcSNP891	20	TcSNP917
21	TcSNP929	22	TcSNP994	23	TcSNP1062	24	TcSNP1075	25	TcSNP1165
26	TcSNP1253	27	TcSNP1270	28	TcSNP1350	29	TcSNP1414	30	TcSNP1442
31	TcSNP1458	32	TcSNP1484