SNP Profiles of TSH 516   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATACGGCTACCGAACTAAAGAGACCT
1._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
2._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
3._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
4._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
5._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
6._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
7._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
8._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
9._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
10._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
11._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
12._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
13._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
14._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
15._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
16._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
17._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
18._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
19._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
20._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
21._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
22._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
23._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
24._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
25._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
26._TSH_516___
CGATACGG__ACCGAACTAAAGAGACCT
27._TSH_516___
CGATACGG__ACCGAACTAAAGAGACCT
28._TSH_516___
CGATACGGCTACCGAACTAAAGAGACCT
29._TSH_516___
____ACGGCTACCGAACTAA__AGACCT
30._TSH_516___
____AC________AA________AA__
31._TSH_516___
CGATACGT__ACCCAGCCAAAAAGAACC
32._TSH_516___
CGATACGT__ACCCAGCCAAAAAGAACC
33._TSH_516___
CGATACCCAGACCGAAAGAAAG__AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GTCGACTTAGGTCGCTCTCGATCTAGCT
1._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
2._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
3._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
4._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
5._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
6._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
7._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
8._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
9._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
10._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
11._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
12._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
13._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
14._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
15._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
16._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
17._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
18._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
19._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
20._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
21._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
22._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
23._TSH_516___
GTCGACTTAGGTCGCTCTCGATCTAGCT
24._TSH_516___
GTCGAC__AGGTCGCTCTCGATCTAGCT
25._TSH_516___
GTCGAC__AGGTCGCTCTCGATCTAGCT
26._TSH_516___
GTCG__TT__GTCG__CTCGATCTAGCT
27._TSH_516___
GTCG__TT__GTCG__CTCGATCTAGCT
28._TSH_516___
GTCGACTTGGGTCGCTCTCGATCTAGCT
29._TSH_516___
GTGGACTT__GTCG__________AGCT
30._TSH_516___
__CGAC__GGGTCG__________AG__
31._TSH_516___
GGCCACTTAAGTCGCTCTCGATCTAGCT
32._TSH_516___
GGCCACTTAAGTCGCTCTCGATCTAGCT
33._TSH_516___
ACCGACAA__ACCGAGAGCGATAGAGAG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
1._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
2._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
3._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
4._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
5._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
6._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
7._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
8._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
9._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
10._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
11._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
12._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
13._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
14._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
15._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
16._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
17._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
18._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
19._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
20._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
21._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
22._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
23._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
24._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
25._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
26._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
27._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
28._TSH_516___
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
29._TSH_516___
________GT______CTCGAG__X_XX_X
30._TSH_516___
AG__CT__GT________CG____X_XX_X
31._TSH_516___
AGAACTCTGTCCACCTCCCGAGCTX_XX_X
32._TSH_516___
AGAACTCTGTCCACCTCCCGAGCTX_XX_X
33._TSH_516___
AGAT____ACAGACAGAGCGAGAGX_XX_X

Input profile: TSH_516

 
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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

1._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

2._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

11._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._TSH_516 GC-08-208-6-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

14._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

15._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

16._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

17._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

18._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

19._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

20._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

21._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

22._TSH_516

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016

23._TSH_516 GC-08-209-6-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

25._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

26._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

28._TSH_516 RUQ_1018

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._TSH_516 RUQ_1018

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._TSH_516 RUQ_1018

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.317 Cri
0.200 Sca
0.443

31._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._TSH_516

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 5
 Dapeng Zhang, 2016

33._TSH_516 RUQ_1018

57.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520