SNP Profiles of TSH 516   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATACGTACCCAGCCAAAAAGAACCGG
1._TSH_516___
CGATACGTACCCAGCCAAAAAGAACCGG
2._TSH_516___
____AC______AA________AA____
3._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
4._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
5._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
6._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
7._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
8._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
9._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
10._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
11._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
12._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
13._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
14._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
15._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
16._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
17._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
18._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
19._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
20._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
21._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
22._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
23._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
24._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
25._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
26._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
27._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
28._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
29._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
30._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
31._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
32._TSH_516___
____ACGGACCGAACTAA__AGACCTGT
33._TSH_516___
CGATACCCACCGAAAGAAAG__AC__AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCACTTAAGTCGCTCTCGATCTAGCTAG
1._TSH_516___
CCACTTAAGTCGCTCTCGATCTAGCTAG
2._TSH_516___
CGAC__GGGTCG__________AG__AG
3._TSH_516___
CG__TT__GTCG__CTCGATCTAGCTAG
4._TSH_516___
CG__TT__GTCG__CTCGATCTAGCTAG
5._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
6._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
7._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
8._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
9._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
10._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
11._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
12._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
13._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
14._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
15._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
16._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
17._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
18._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
19._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
20._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
21._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
22._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
23._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
24._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
25._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
26._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
27._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
28._TSH_516___
CGACTTAGGTCGCTCTCGATCTAGCTAG
29._TSH_516___
CGAC__AGGTCGCTCTCGATCTAGCTAG
30._TSH_516___
CGAC__AGGTCGCTCTCGATCTAGCTAG
31._TSH_516___
CGACTTGGGTCGCTCTCGATCTAGCTAG
32._TSH_516___
GGACTT__GTCG__________AGCT__
33._TSH_516___
CGACAA__ACCGAGAGCGATAGAGAGAG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AACTCTGTCCACCTCCCGAGCTX_XX_XX_X
1._TSH_516___
AACTCTGTCCACCTCCCGAGCTX_XX_XX_X
2._TSH_516___
__CT__GT________CG____X_XX_XX_X
3._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
4._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
5._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
6._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
7._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
8._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
9._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
10._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
11._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
12._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
13._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
14._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
15._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
16._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
17._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
18._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
19._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
20._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
21._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
22._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
23._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
24._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
25._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
26._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
27._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
28._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
29._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
30._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
31._TSH_516___
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
32._TSH_516___
______GT______CTCGAG__X_XX_XX_X
33._TSH_516___
AT____ACAGACAGAGCGAGAGX_XX_XX_X

Input profile: TSH_516

 
Mars Center for Cocoa Science, Brazil
Location: 8605 5
 Dapeng Zhang, 2016

1._TSH_516 GC-08-209-6-05

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._TSH_516 RUQ_1018

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._TSH_516 GC-08-208-6-04

83.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._TSH_516

83.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

5._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

6._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

15._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._TSH_516 GC-08-208-6-04

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

18._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

19._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

20._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

21._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

22._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

23._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

24._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

25._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

26._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

27._TSH_516

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016

28._TSH_516 GC-08-209-6-05

83.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

29._TSH_516 GC-08-208-6-04

82.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

30._TSH_516

82.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

31._TSH_516 RUQ_1018

82.1 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._TSH_516 RUQ_1018

77.3 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._TSH_516 RUQ_1018

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP193
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520