SNP Profiles of TSH 516   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATACGGACCGAACTAAAGAGACCTGT
1._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
2._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
3._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
4._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
5._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
6._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
7._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
8._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
9._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
10._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
11._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
12._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
13._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
14._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
15._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
16._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
17._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
18._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
19._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
20._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
21._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
22._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
23._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
24._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
25._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
26._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
27._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
28._TSH_516___
CGATACGGACCGAACTAAAGAGACCTGT
29._TSH_516___
____ACGGACCGAACTAA__AGACCTGT
30._TSH_516___
____AC______AA________AA____
31._TSH_516___
CGATACGTACCCAGCCAAAAAGAACCGG
32._TSH_516___
CGATACGTACCCAGCCAAAAAGAACCGG
33._TSH_516___
CGATACCCACCGAAAGAAAG__AC__AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGTTGTCGCTCGATCTAGCTAGATCTCT
1._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
2._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
3._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
4._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
5._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
6._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
7._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
8._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
9._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
10._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
11._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
12._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
13._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
14._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
15._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
16._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
17._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
18._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
19._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
20._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
21._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
22._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
23._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
24._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
25._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
26._TSH_516___
CGTTGTCGCTCGATCTAGCTAGATCTCT
27._TSH_516___
CG__GTCGCTCGATCTAGCTAGATCTCT
28._TSH_516___
CG__GTCGCTCGATCTAGCTAGATCTCT
29._TSH_516___
GGTTGTCG________AGCT________
30._TSH_516___
CG__GTCG________AG__AG__CT__
31._TSH_516___
CCTTGTCGCTCGATCTAGCTAGAACTCT
32._TSH_516___
CCTTGTCGCTCGATCTAGCTAGAACTCT
33._TSH_516___
CGAAACCGAGCGATAGAGAGAGAT____
 29 30 31 32 33 34 35 36       
_Input profile
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
1._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
2._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
3._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
4._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
5._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
6._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
7._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
8._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
9._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
10._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
11._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
12._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
13._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
14._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
15._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
16._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
17._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
18._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
19._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
20._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
21._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
22._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
23._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
24._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
25._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
26._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
27._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
28._TSH_516___
GTCTACCTCTCGAGCTX_XX_XX_XX_XX_XX_X
29._TSH_516___
GT______CTCGAG__X_XX_XX_XX_XX_XX_X
30._TSH_516___
GT________CG____X_XX_XX_XX_XX_XX_X
31._TSH_516___
GTCCACCTCCCGAGCTX_XX_XX_XX_XX_XX_X
32._TSH_516___
GTCCACCTCCCGAGCTX_XX_XX_XX_XX_XX_X
33._TSH_516___
ACAGACAGAGCGAGAGX_XX_XX_XX_XX_XX_X

Input profile: TSH_516

 
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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

1._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

2._TSH_516 GC-08-209-6-05

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._TSH_516 GC-08-209-6-05

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._TSH_516 GC-08-209-6-05

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._TSH_516 GC-08-209-6-05

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._TSH_516 GC-08-209-6-05

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._TSH_516 GC-08-209-6-05

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

12._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._TSH_516 GC-08-208-6-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

15._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

16._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

17._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

18._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

19._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

20._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

21._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

22._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

23._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

24._TSH_516

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016

25._TSH_516 GC-08-209-6-05

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._TSH_516 RUQ_1018

identical
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._TSH_516 GC-08-208-6-04

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

28._TSH_516

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

29._TSH_516 RUQ_1018

97.6 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._TSH_516 RUQ_1018

95.5 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.317 Cri
0.200 Sca
0.443

31._TSH_516 GC-08-209-6-05

83.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._TSH_516

83.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 5
 Dapeng Zhang, 2016

33._TSH_516 RUQ_1018

59.4 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP193
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP619 17TcSNP723 18TcSNP872 19TcSNP917 20TcSNP929
21TcSNP953 22TcSNP994 23TcSNP998 24TcSNP1060 25TcSNP1062
26TcSNP1075 27TcSNP1144 28TcSNP1165 29TcSNP1253 30TcSNP1270
31TcSNP1350 32TcSNP1414 33TcSNP1442 34TcSNP1458 35TcSNP1484
36TcSNP1520