SNP Profiles of NA 168 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AG	CC	TT	AA	TT	CC	AA	GG	CC	AG	TT	AA	GG	CC
1._GC-01-112-6-09	AG	CC	TT	AA	TT	CT	AA	GG	CC	AA	CT	AA	GG	CT
2._NA_168	AG	CC	TT	AA	TT	CT	AA	GG	CC	AA	CT	AA	GG	CT
3._GC-01-112-6-09	AG	CC	TT	AA	TT	CT	AA	GG	CC	AA	CT	AA	GG	CT
4._NA_168	AG	CC	TT	AA	TT	CT	AA	GG	CC	AA	CT	AA	GG	CT
5._NA_168	AG	CC	TT	AA	TT	CT	AA	GG	CC	AA	CT	AA	GG	CT
6._GC-01-112-6-09	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
7._NA_168	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
8._NA_168	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
9._GC-01-112-6-09	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
10._GC-01-112-6-09	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
11._GC-01-112-6-09	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
12._GC-01-112-6-09	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
13._GC-01-112-6-09	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
14._NA_168	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
15._NA_168	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
16._NA_168	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT
17._NA_168	AA	CG	TT	AA	TT	CC	AA	GG	CC	AG	TT	AT	GG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	GG	GG	AA	CC	AA	GG	GT	TT	CC	AG	GG	AA	CC
1._GC-01-112-6-09	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC	AG	GG	AA	CC
2._NA_168	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC	AG	GG	AA	CC
3._GC-01-112-6-09	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC	AG	GG	AA	CC
4._NA_168	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC	AG	GG	AA	CC
5._NA_168	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC	AG	GG	AA	CC
6._GC-01-112-6-09	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
7._NA_168	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
8._NA_168	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
9._GC-01-112-6-09	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
10._GC-01-112-6-09	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
11._GC-01-112-6-09	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
12._GC-01-112-6-09	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
13._GC-01-112-6-09	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
14._NA_168	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
15._NA_168	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
16._NA_168	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT
17._NA_168	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC	AG	GG	AT	CT

	29	30	31	32	33	34	35
_Input profile	AA	AC	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-112-6-09	AA	AA	_	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._NA_168	AA	AA	_	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-112-6-09	AA	AA	CT	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._NA_168	AA	AA	CT	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._NA_168	AA	AA	CT	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-112-6-09	AG	AA	_	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._NA_168	AG	AA	_	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._NA_168	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-112-6-09	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-112-6-09	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-01-112-6-09	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-01-112-6-09	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-112-6-09	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._NA_168	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._NA_168	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._NA_168	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._NA_168	AG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: NA_168

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F493 T5

Dapeng Zhang, 2016

1._NA_168 GC-01-112-6-09

85.3 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

2._NA_168

85.3 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

3._NA_168 GC-01-112-6-09

84.3 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._NA_168

84.3 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._NA_168

84.3 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 435

Dapeng Zhang, 2016

6._NA_168 GC-01-112-6-09

77.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

7._NA_168

77.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 3 > FP

Dapeng Zhang, 2016

8._NA_168

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 4 > FP

Dapeng Zhang, 2016

9._NA_168 GC-01-112-6-09

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

10._NA_168 GC-01-112-6-09

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

11._NA_168 GC-01-112-6-09

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

12._NA_168 GC-01-112-6-09

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

13._NA_168 GC-01-112-6-09

77.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._NA_168

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._NA_168

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 12

Dapeng Zhang, 2016

16._NA_168

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 1 > FP

Dapeng Zhang, 2016

17._NA_168

77.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 6 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1350	5	TcSNP1270
6	TcSNP1165	7	TcSNP1075	8	TcSNP1062	9	TcSNP1060	10	TcSNP998
11	TcSNP994	12	TcSNP953	13	TcSNP929	14	TcSNP917	15	TcSNP891
16	TcSNP872	17	TcSNP723	18	TcSNP645	19	TcSNP619	20	TcSNP591
21	TcSNP577	22	TcSNP560	23	TcSNP534	24	TcSNP529	25	TcSNP469
26	TcSNP429	27	TcSNP372	28	TcSNP242	29	TcSNP230	30	TcSNP193
31	TcSNP151	32	TcSNP150	33	TcSNP144	34	TcSNP32	35	TcSNP25