SNP Profiles of TSH 516   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTACACGGCTGGACCGAACTAAAGAACC
1._TSH_516___
____ACGGCT__ACCGAACT____AA__
2._TSH_516___
____ACGGCT__ACCGAACT____AA__
3._TSH_516___
____ACGGCT__ACCGAACT____AA__
4._TSH_516___
____ACGGCT__ACCGAACT____AA__
5._TSH_516___
____ACGGCT__ACCGAACT____AA__
6._TSH_516___
____ACGGCT__ACCGAACT____AA__
7._TSH_516___
____ACGGCT__ACCGAACT____AA__
8._TSH_516___
____ACGGCT__ACCGAACT____AA__
9._TSH_516___
____ACGGCT__ACCGAACT____AA__
10._TSH_516___
____ACGGCT__ACCGAACT____AA__
11._TSH_516___
____ACGGCT__ACCGAACT____AA__
12._TSH_516___
____ACGGCT__ACCGAACT____AA__
13._TSH_516___
____ACGGCT__ACCGAACT____AA__
14._TSH_516___
____ACGGCT__ACCGAACT____AA__
15._TSH_516___
____ACGG____ACCGAACT____AA__
16._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
17._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
18._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
19._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
20._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
21._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
22._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
23._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
24._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
25._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
26._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
27._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
28._TSH_516___
TTACACGGCTGGACCGAACTAAAGAACG
29._TSH_516___
TTACACGG__GGACCGAACTAGAGAACG
30._TSH_516___
____AC__________AA__AA______
31._TSH_516___
TTCCACGT__GGACCCAGCCAGGGAACG
32._TSH_516___
____ACGT____ACCCAGCC____AA__
33._TSH_516___
AAACACCCAGGGACCGAAAGAAAGAACG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGACCTGTGGACCCTTCTGTAGTTACCG
1._TSH_516___
AGACCTGTCGAC__TT__GT______CG
2._TSH_516___
AGACCTGTCGAC__TT__GT______CG
3._TSH_516___
AGACCTGTCGAC__TT__GT______CG
4._TSH_516___
AGACCTGTCGAC__TT__GT______CG
5._TSH_516___
AGACCTGTCGAC__TT__GT______CG
6._TSH_516___
AGACCTGTCGAC__TT__GT______CG
7._TSH_516___
AGACCTGTCGAC__TT__GT______CG
8._TSH_516___
AGACCTGTCGAC__TT__GT______CG
9._TSH_516___
AGACCTGTCGAC__TT__GT______CG
10._TSH_516___
AGACCTGTCGAC__TT__GT______CG
11._TSH_516___
AGACCTGTCGAC__TT__GT______CG
12._TSH_516___
AGACCTGTCGAC__TT__GT______CG
13._TSH_516___
AGACCTGTCGAC__TT__GT______CG
14._TSH_516___
AGACCTGTCGAC______GT______CG
15._TSH_516___
AGACCTGTCG____TT__GT______CG
16._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
17._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
18._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
19._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
20._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
21._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
22._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
23._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
24._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
25._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
26._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
27._TSH_516___
AGACCTGTCGACCCTTCTGTAGTTACCG
28._TSH_516___
AGACCTGTCGACCC__CTGTAGTTACCG
29._TSH_516___
AGACCTGTCG__CCTTCTGT__TTACCG
30._TSH_516___
__AA____CGACCC__CTGTAG__ACCG
31._TSH_516___
AGAACCGGCCACCCTTCTGTAATTACCG
32._TSH_516___
AGAACCGGCCAC__TT__GT______CG
33._TSH_516___
__AC__ACCGACGGAA__ACAGAAACCG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
CGAGCTGTAGATGTCTCTCTCGAGX_XX_X
1._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
2._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
3._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
4._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
5._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
6._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
7._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
8._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
9._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
10._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
11._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
12._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
13._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
14._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
15._TSH_516___
__AGCT______GT____CTCGAGX_XX_X
16._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
17._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
18._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
19._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
20._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
21._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
22._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
23._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
24._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
25._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
26._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
27._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
28._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
29._TSH_516___
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
30._TSH_516___
__AG________GT______CG__X_XX_X
31._TSH_516___
CGAGCTGGAGTTGT__CTCCCGAGX_XX_X
32._TSH_516___
__AGCT______GT____CCCGAGX_XX_X
33._TSH_516___
__AGAGACAG__ACAGAGAGCGAGX_XX_X

Input profile: TSH_516 RUQ_1018

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

2._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

3._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

4._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

5._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

6._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

7._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

8._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

9._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

10._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

11._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

12._TSH_516

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016

13._TSH_516 RUQ_1018

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._TSH_516

97.7 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

15._TSH_516

97.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

16._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

19._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

20._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

25._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

26._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

28._TSH_516 GC-08-208-6-04

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._TSH_516 GC-08-208-6-04

94.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

30._TSH_516 RUQ_1018

93.3 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

31._TSH_516 GC-08-209-6-05

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._TSH_516

77.3 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8605 5
 Dapeng Zhang, 2016

33._TSH_516 RUQ_1018

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP998
31TcSNP1060 32TcSNP1063 33TcSNP1111 34TcSNP1126 35TcSNP1253
36TcSNP1309 37TcSNP1439 38TcSNP1442 39TcSNP1458 40TcSNP1484