SNP Profiles of RB-37   View Data

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 Key

 1234567891011121314
_Input profile
ACACGGCCAAGGGGCCAAGGGGAAAAAC
1._GC-01-43-2-20
ACACGGCCAAGGGGCCAAGGGGAAAAAC
2._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
3._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
4._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
5._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
6._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
7._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
8._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
9._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
10._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
11._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
12._GC-01-043-2-20
ACACGGCCTTCCGGGGAACCGGTTTTGT
13._RB_37_[BRA]
_____CCGG_AA_____
14._RB_37_[BRA]
_____CCGG_AA_____
15._RB_37_[BRA]
_____CCGG_AA_____
16._RB_37_[BRA]
_____CCGG_AA_____
17._RB_37_[BRA]
_____CCGG_AA_____
18._RB_37_[BRA]
_____CCGG_AA_____
19._RB_37_[BRA]
_____CCGG_AA_____
20._RB_37_[BRA]
_____CCGG_AA_____
21._RB_37_[BRA]
_____CCGG_AA_____
22._RUQ_1705
______GG_______
23._RB_37_[BRA]
_____CCGG_AA_____
24._RB_37_[BRA]
_____CCGG_AA_____
25._RB_37_[BRA]
_____CTGG_AA_____
26._RB_37_[BRA]
_____CTGG_AA_____
27._RUQ_135
_____CTGG_AA_____
 1516171819202122232425262728
_Input profile
AGCCAAAGGGAGGGCCGGGGAACCAAGG
1._GC-01-43-2-20
AGCCAAAGGGAGGGCCGGGGAACCAAGG
2._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
3._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
4._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
5._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
6._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
7._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
8._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
9._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
10._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
11._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
12._GC-01-043-2-20
CTGGTTTTGGCTCCCCCCCCAAGGTTCC
13._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
14._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
15._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
16._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
17._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
18._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
19._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
20._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
21._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
22._RUQ_1705
_GG_____AC_CC____
23._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
24._RB_37_[BRA]
_GGTT__CT_CCCCCCAAGGTTCC
25._RB_37_[BRA]
_GGTT__CC_ACCCCCAAGGCC_
26._RB_37_[BRA]
_GGTT__CC_ACCTCCAAGG_CC
27._RUQ_135
_GGTT__CC_ACCCCCAGGGCCCC
 2930313233343536373839404142
_Input profile
ATGGCCCCAAGGAAGGCCAAAAAGGGAA
1._GC-01-43-2-20
ATGGCCCCAAGGAAGGCCAAAAAGGGAA
2._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
3._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
4._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
5._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
6._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
7._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
8._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
9._GC-01-043-2-20
ATGG_GGAAGGTTGGGGTTAAAGGGAA
10._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
11._GC-01-043-2-20
ATGGCCGGAAGGTTGGGGTTAAAGGGAA
12._GC-01-043-2-20
ATGG_GGAAGGCCGGGGTTAAAGGGAA
13._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
14._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
15._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
16._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
17._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
18._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
19._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
20._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
21._RB_37_[BRA]
__CCGGAA_TTGG__AA__AA
22._RUQ_1705
____AA______AG__
23._RB_37_[BRA]
___GGAA_CCGG__AA__AA
24._RB_37_[BRA]
___GGAA_TTGG__AA__AA
25._RB_37_[BRA]
__CC_AA_CTGG__AA__AA
26._RB_37_[BRA]
__CC_AA_CTGG__AA__AA
27._RUQ_135
__CCGGAA_CTGG__AA__AA
 4344454647484950515253545556
_Input profile
GGAAGGGGAACCAGACCCAACCGGCGAC
1._GC-01-43-2-20
GGAAGGGGAACCAGACCCAACCGGCGAC
2._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
3._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
4._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
5._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
6._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
7._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
8._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
9._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
10._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGG_GGAC
11._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
12._GC-01-043-2-20
CCAAGGGGAAGG_ACCCAAGGGGGGAC
13._RB_37_[BRA]
___GG____CC_GG_GGAC
14._RB_37_[BRA]
___GG____CC_GG_GGAC
15._RB_37_[BRA]
___GG____CC_GG_GGAC
16._RB_37_[BRA]
___GG____CC_GG_GGAC
17._RB_37_[BRA]
___GG____CC_GG_GGAC
18._RB_37_[BRA]
___GG____CC_GG_GGAC
19._RB_37_[BRA]
___GG____CC_GG_GGAC
20._RB_37_[BRA]
___GG____CC_GG_GGAC
21._RB_37_[BRA]
___GG____CC_GG_GGAC
22._RUQ_1705
________AA___GGCC
23._RB_37_[BRA]
___GG____CC_GG_GGAC
24._RB_37_[BRA]
___GG____CC_GG_GGAC
25._RB_37_[BRA]
___GG____AC___GGCC
26._RB_37_[BRA]
________AC_GG_GGCC
27._RUQ_135
___GG____AC_GG_GGCC
 5758596061626364656667686970
_Input profile
GGGGGGAAAACCAAAACCACAACCCCAA
1._GC-01-43-2-20
GGGGGGAAAACCAAAACCACAACCCCAA
2._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
3._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
4._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
5._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
6._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
7._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
8._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
9._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
10._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
11._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
12._GC-01-043-2-20
CCCCCCAAGGGGAATTGGGTTTCCGGAA
13._RB_37_[BRA]
__CC__GG________
14._RB_37_[BRA]
__CC__GG________
15._RB_37_[BRA]
__CC__GG________
16._RB_37_[BRA]
__CC__GG________
17._RB_37_[BRA]
__CC__GG________
18._RB_37_[BRA]
__CC__GG________
19._RB_37_[BRA]
__CC__GG________
20._RB_37_[BRA]
__CC__GG________
21._RB_37_[BRA]
__CC__GG________
22._RUQ_1705
_CC___GGAA____ACTT_
23._RB_37_[BRA]
__CC__GG________
24._RB_37_[BRA]
__CC__GG________
25._RB_37_[BRA]
__CC__GG________
26._RB_37_[BRA]
__CC__GG________
27._RUQ_135
__CC__GG________
 7172737475767778798081   
_Input profile
CCAAGGAGCCAAGGGGAAGGAAX_XX_XX_X
1._GC-01-43-2-20
CCAAGGAGCCAAGGGGAAGGAAX_XX_XX_X
2._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
3._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
4._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
5._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
6._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
7._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
8._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
9._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
10._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
11._GC-01-043-2-20
GGTTCC_CCTTGGCCAACCAAX_XX_XX_X
12._GC-01-043-2-20
GGTTCCAGCCTTGGCCAACCAAX_XX_XX_X
13._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
14._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
15._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
16._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
17._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
18._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
19._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
20._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
21._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
22._RUQ_1705
GG__GG______AAX_XX_XX_X
23._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
24._RB_37_[BRA]
GGTT___TTGG_AACCAAX_XX_XX_X
25._RB_37_[BRA]
GGTT___CTCG_AACCAAX_XX_XX_X
26._RB_37_[BRA]
GGTT___CTCG_AACCAAX_XX_XX_X
27._RUQ_135
GGCT___CTCG_AACCAAX_XX_XX_X

Input profile: RB_37_[BRA] GC-01-43-2-20

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._RB_37_[BRA] GC-01-43-2-20

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

2._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

3._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

4._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._RB_37_[BRA] GC-01-043-2-20

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

11._RB_37_[BRA] GC-01-043-2-20

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._RB_37_[BRA] GC-01-043-2-20

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

13._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

14._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

15._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

16._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

17._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

18._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

19._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

20._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

21._RB_37_[BRA]

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

22._RB_37_[BRA] RUQ_1705

44.1 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._RB_37_[BRA]

43.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

24._RB_37_[BRA]

43.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

25._RB_37_[BRA]

43.5 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

26._RB_37_[BRA]

40.3 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._RB_37_[BRA] RUQ_135

38.2 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998