SNP Profiles of CATIE-R4_PL5   View Data

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 Key

 1234567891011121314
_Input profile
CCCCAGACAAGGAGCCATGGAGAGAGAA
1._MCCS-14-051
CCCCAGACAAGGAGCCATGGAGAGAGAA
2._MCCS-14-051
CCCCAGACAAGGAGCCATGGAGAGAGAA
3._MCCS-14-051
CCCCAGACAAGGAGCCATGGAGAGAGAA
4._MCCS-14-051
CCCCAGACAAGGAGCCATGGAGAGAGAA
5._CATIE-R4
CCCCAGACAAGGAGCCATGGAGAGAGAA
 1516171819202122232425262728
_Input profile
AGACAAAGCCGGAAAGACGGCGAAACAG
1._MCCS-14-051
AGACAAAGCCGGAAAGACGGCGAAACAG
2._MCCS-14-051
AGACAAAGCCGGAAAGACGGCGAAACAG
3._MCCS-14-051
AGACAAAGCCGGAAAGACGGCGAAACAG
4._MCCS-14-051
AGACAAAGCCGGAAAGACGGCGAAACAG
5._CATIE-R4
AGACAAAGCCGGAAAGACGGCGAAACAG
 2930313233343536373839404142
_Input profile
AGATGGAAGGAAGGGGGGATAAGGGGAT
1._MCCS-14-051
AGATGGAAGGAAGGGGGGATAAGGGGAT
2._MCCS-14-051
AGATGGAAGGAAGGGGGGATAAGGGGAT
3._MCCS-14-051
AGATGGAAGGAAGGGGGGATAAGGGGAT
4._MCCS-14-051
AGATGGAAGGAAGGGGGGATAAGGGGAT
5._CATIE-R4
AGATGGAAGGAAGGGGGGATAAGGGGAT
 4344454647484950515253545556
_Input profile
AGAAAGGGAAGGAGCCACAAACGGCGCC
1._MCCS-14-051
AGAAAGGGAAGGAGCCACAAACGGCGCC
2._MCCS-14-051
AGAAAGGGAAGGAGCCACAAACGGCGCC
3._MCCS-14-051
AGAAAGGGAAGGAGCCACAAACGGCGCC
4._MCCS-14-051
AGAAAGGGAAGGAGCCACAAACGGCGCC
5._CATIE-R4
AGAAAGGGAAGGAGCCACAAACGGCGCC
 5758596061626364656667686970
_Input profile
GGAGAGAGAACCAGAAACACAAACGGAA
1._MCCS-14-051
GGAGAGAGAACCAGAAACACAAACGGAA
2._MCCS-14-051
GGAGAGAGAACCAGAAACACAAACGGAA
3._MCCS-14-051
GGAGAGAGAACCAGAAACACAAACGGAA
4._MCCS-14-051
GGAGAGAGAACCAGAAACACAAACGGAA
5._CATIE-R4
GGAGAGAGAACCAGAAACACAAACGGAA
 7172737475767778798081   
_Input profile
CCGGGGGGCCAGCGGGATAGAAX_XX_XX_X
1._MCCS-14-051
CCGGGGGGCCAGCGGGATAGAAX_XX_XX_X
2._MCCS-14-051
CCGGGGGGCCAGCGGGATAGAAX_XX_XX_X
3._MCCS-14-051
CCGGGGGGCCAGCGGGATAGAAX_XX_XX_X
4._MCCS-14-051
CCGGGGGGCCAGCGGGATAGAAX_XX_XX_X
5._CATIE-R4
CCGGGGGGCCAGCGGGATAGAAX_XX_XX_X

Input profile: CATIE-R4 MCCS-14-051

 
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Mars Center for Cocoa Science, Brazil
Location: Field: CT-10, Block: 1, Rep: 51, Tree: 5
Notes: Brazil_Selections_AD
 Mars, 2018

1._CATIE-R4 MCCS-14-051

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: CT-10, Block: 1, Rep: 51, Tree: 1
Notes: Brazil_Selections_AD
 Mars, 2018

2._CATIE-R4 MCCS-14-051

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: CT-10, Block: 1, Rep: 51, Tree: 2
Notes: Brazil_Selections_AD
 Mars, 2018

3._CATIE-R4 MCCS-14-051

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: CT-10, Block: 1, Rep: 51, Tree: 3
Notes: Brazil_Selections_AD
 Mars, 2018

4._CATIE-R4 MCCS-14-051

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: CT-10, Block: 1, Rep: 51, Tree: 4
Notes: Brazil_Selections_AD
 Mars, 2018

5._CATIE-R4

identical
81 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Tree: 12
Notes: Top yield
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998