SNP Profiles of EET_272   View Data

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 Key

 1234567891011121314
_Input profile
CCACAACCAAAGGGCCAAGGGGAAAACC
1._RUQ_6
CCACAACCAAAGGGCCAAGGGGAAAACC
2._GC-03-32-3-11
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._RUQ_6
______GG_______
4._GC-03-032-3-11
CCAC_CCTTCTGGGGAACCGGTTTTGG
5._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
6._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
7._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
8._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
9._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
10._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
11._GC-03-032-3-11
CCACAACCTTCTGGGGAACCGGTTTTGG
12._EET_272_[ECU]
_____CTGG_AA_____
13._EET_272_[ECU]
_____CTGG_AA_____
14._EET_272_[ECU]
_____CTGG_AA_____
15._EET_272_[ECU]
_____CTGG_AA_____
16._EET_272_[ECU]
_____CTGG_AA_____
17._EET_272_[ECU]
_____CTGG_AA_____
18._EET_272_[ECU]
_____CTGG_AA_____
19._EET_272_[ECU]
_____CTGG_AA_____
20._RUQ_6
_____CT_GG__GG___
21._EET_272_[ECU]
_____CT__AA_____
22._GC-03-032-3-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
23._EET_272_[ECU]
_____CCAG_AA_____
24._GC-03-032-3-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
25._EET_272_[ECU]
_____CCAG_AA_____
 1516171819202122232425262728
_Input profile
AAAAAAAAAAGGAAGGACAAGGAACCAG
1._RUQ_6
AAAAAAAAAAGGAAGGACAAGGAACCAG
2._GC-03-32-3-11
AAAAAGAAACGGAAGGCCGGCCGGCCGG
3._RUQ_6
_TT______AC_CC___
4._GC-03-032-3-11
TTTTTT_AAGGTTCCACTTCCAAGGCT
5._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
6._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
7._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
8._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
9._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
10._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
11._GC-03-032-3-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
12._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
13._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
14._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
15._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
16._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
17._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
18._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
19._EET_272_[ECU]
_TTTT_AA_TT_ACTTCCAAGGCT
20._RUQ_6
_TT_TT___CCACTTCCAAGGCT
21._EET_272_[ECU]
_TT__AA_TT_ACTT_AA_CT
22._GC-03-032-3-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
23._EET_272_[ECU]
_TTCT_AC_TT_CCCCGGGGGGCC
24._GC-03-032-3-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
25._EET_272_[ECU]
_TTCT_AC_TT_CCCCGGGGGGCC
 2930313233343536373839404142
_Input profile
GGATGGAAGGAAGGAGGGCCTTTTAGGG
1._RUQ_6
GGATGGAAGGAAGGAGGGCCTTTTAGGG
2._GC-03-32-3-11
AGTTGGACGGAGGGGGGGCCTTATGGGG
3._RUQ_6
_____AA______AG_
4._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
5._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
6._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
7._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
8._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
9._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
10._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
11._GC-03-032-3-11
CCATGGAACCAAGGCTGGGGAATTAGGG
12._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
13._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
14._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
15._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
16._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
17._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
18._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
19._EET_272_[ECU]
CC__AACCAA_CTGG__TT__
20._RUQ_6
__GGAACCAA_CT____AGGG
21._EET_272_[ECU]
CT__AACCAA_CTGG_____
22._GC-03-032-3-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
23._EET_272_[ECU]
CT__AACCAG_CCGG__AT__
24._GC-03-032-3-11
CTAAGG_CCAGGGCCGGGGAAATGGGG
25._EET_272_[ECU]
CT___CCAG_CCGG__AT__
 4344454647484950515253545556
_Input profile
AAAGGGGGGGAAGGAAAACCGGACGGGG
1._RUQ_6
AAAGGGGGGGAAGGAAAACCGGACGGGG
2._GC-03-32-3-11
AAAAGGGGGGTTGGGGCCACAAACAGCG
3._RUQ_6
_________AC___GG
4._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
5._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
6._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
7._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
8._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
9._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
10._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
11._GC-03-032-3-11
AACTGGGGGGAACC_AACCGGGTGGGG
12._EET_272_[ECU]
AA___GG____CC_GT_GG
13._EET_272_[ECU]
AA___GG____CC_GT_GG
14._EET_272_[ECU]
AA___GG____CC_GT_GG
15._EET_272_[ECU]
AA___GG____CC_GT_GG
16._EET_272_[ECU]
AA___GG____CC_GT_GG
17._EET_272_[ECU]
AA___GG____CC_GT_GG
18._EET_272_[ECU]
AA___GG____CC_GT_GG
19._EET_272_[ECU]
AA___GG____CC_GT_GG
20._RUQ_6
AA_____CC__CC_GT_GG
21._EET_272_[ECU]
____AG______GT__
22._GC-03-032-3-11
AATTGGGGGGTTCC_CCACAAGTAGCG
23._EET_272_[ECU]
AA___GG____AC_GT_CG
24._GC-03-032-3-11
AATTGGGGGGTTCC_CCACAAGTAGCG
25._EET_272_[ECU]
AA___GG____AC_GT_CG
 5758596061626364656667686970
_Input profile
AAGGGGAGAAAACCGGAAAACCAAACCC
1._RUQ_6
AAGGGGAGAAAACCGGAAAACCAAACCC
2._GC-03-32-3-11
CCGGAGAAAGAACCAGAAAACCAAAACG
3._RUQ_6
__CC___GGGG____ACTT
4._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
5._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
6._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
7._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
8._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
9._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
10._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
11._GC-03-032-3-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
12._EET_272_[ECU]
AA__CT__GG_______
13._EET_272_[ECU]
AA__CT__GG_______
14._EET_272_[ECU]
AA__CT__GG_______
15._EET_272_[ECU]
AA__CT__GG_______
16._EET_272_[ECU]
AA__CT__GG_______
17._EET_272_[ECU]
AA__CT__GG_______
18._EET_272_[ECU]
AA__CT__GG_______
19._EET_272_[ECU]
AA__CT__GG_______
20._RUQ_6
AA_CCCT__GGGGTT__TTAC_
21._EET_272_[ECU]
AA__CT__GG_______
22._GC-03-032-3-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
23._EET_272_[ECU]
CC__TT__GG_______
24._GC-03-032-3-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
25._EET_272_[ECU]
CC__TT__GG_______
 717273747576777879808182  
_Input profile
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
1._RUQ_6
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
2._GC-03-32-3-11
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
3._RUQ_6
_CC__GG______AGX_XX_X
4._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
5._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
6._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
7._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
8._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
9._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
10._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
11._GC-03-032-3-11
_CCCTCCGGCCCTGGCCAACTAGX_XX_X
12._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
13._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
14._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
15._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
16._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
17._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
18._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
19._EET_272_[ECU]
_CCCT___CTGG_AACTAGX_XX_X
20._RUQ_6
_CCTT_-CC_____AGX_XX_X
21._EET_272_[ECU]
__CT___CTGG_AACTAGX_XX_X
22._GC-03-032-3-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
23._EET_272_[ECU]
_GGCC___CTCC_AACTAGX_XX_X
24._GC-03-032-3-11
_GGCCCCGGCCCTCCCCAACTAGX_XX_X
25._EET_272_[ECU]
_GGCC___CTCC_AACTAGX_XX_X

Input profile: EET_272_[ECU] MITC-000381

 
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USDA-SHRS, United States of America
 Mars, 2018

1._EET_272_[ECU] RUQ_6

identical
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._EET_272_[ECU] GC-03-32-3-11

70.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._EET_272_[ECU] RUQ_6

59.4 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._EET_272_[ECU] GC-03-032-3-11

50 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

8._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._EET_272_[ECU] GC-03-032-3-11

50 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

12._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

13._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

15._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

16._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

17._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

18._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

19._EET_272_[ECU]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

20._EET_272_[ECU] RUQ_6

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_272_[ECU]

44.2 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

22._EET_272_[ECU] GC-03-032-3-11

36.3 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._EET_272_[ECU]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

24._EET_272_[ECU] GC-03-032-3-11

35.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._EET_272_[ECU]

33.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998