SNP Profiles of APA4 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	TT	TT	AA	CC	GG	CC	CC	GG	CC	GG	TT	AA	CC
1._RUQ_843	GG	TT	TT	AA	CC	_	_	CC	CC	GG	_	_	_	CC
2._RUQ_843	GG	_	_	_	_	_	_	_	_	GG	_	_	_	CC
3._RUQ_843	CC	AA	_	AA	GG	_	GG	GG	_	CC	GG	AA	_	GG
4._APA_4_Fld#_26_Plt#_1	CC	AA	_	AA	GG	_	GG	GG	_	CC	GG	AA	_	GG

	15	16	17	18	19	20	21	22	23	24	25	26
_Input profile	AA	CC	CC	TT	AA	GG	AA	GG	AA	GG	CC	CC	X_X	X_X
1._RUQ_843	AA	CC	CC	_	AA	GG	AA	CC	AA	GG	CC	CC	X_X	X_X
2._RUQ_843	AA	CC	_	_	_	_	AA	_	_	_	_	CC	X_X	X_X
3._RUQ_843	AA	CC	GG	AA	AA	GG	AA	GG	AA	GG	GG	CC	X_X	X_X
4._APA_4_Fld#_26_Plt#_1	AA	CC	GG	AA	AA	GG	AA	GG	AA	GG	GG	CC	X_X	X_X

Input profile: APA_4 APA4

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

1._APA_4 RUQ_843

80 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._APA_4 RUQ_843

71.4 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

3._APA_4 RUQ_843

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

4._APA_4 APA_4_Fld#_26_Plt#_1

59.1 %
22 shared markers

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USDA-TARS, United States of America

Location: Field: 26, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1458	2	TcSNP1439	3	TcSNP1126	4	TcSNP1111	5	TcSNP1060
6	TcSNP1041	7	TcSNP994	8	TcSNP891	9	TcSNP878	10	TcSNP872
11	TcSNP860	12	TcSNP751	13	TcSNP606	14	TcSNP602	15	TcSNP591
16	TcSNP577	17	TcSNP448	18	TcSNP413	19	TcSNP372	20	TcSNP364
21	TcSNP230	22	TcSNP226	23	TcSNP193	24	TcSNP174	25	TcSNP151
26	TcSNP144