SNP Profiles of "SCA 24"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-03-015-2-03
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
2. _GC-03-015-2-03
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
3. _GC-03-015-2-03
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
4. _GC-03-015-2-03
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
5. _GC-03-015-2-03
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
6. _GC-03-015-2-03
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
7. _GC-05-167-4-20
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
8. _GC-05-167-4-20
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
9. _GC-05-167-4-20
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
10. _GC-05-167-4-20
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
11. _GC-05-167-4-20
CGTTAAGGCCTTCCTTAAGGTTTTGGCC
12. _GC-03-15-2-3
CGAAAAGGGGAACCAAAACCAAAAGGCC
13. _GC-05-167-4-20
CGAAAAGGGGAACCAAAACCAAAAGGCC
14. _3203_3
CG___AA_______________AAGGTT______CC
15. _3203_5
CG___AA_______________AAGGTT______CC
16. _3203_9
CG___AA_______________AAGGTT______CC
17. _3203_10
CG___AA_______________AAGGTT______CC
18. _3203_1_>_FP
CG___AA_______________AAGGTT______CC
19. _3203_2_>_FP
CG___AA_______________AAGGTT______CC
20. _5420_4
CG___AA_______________AAGGTT______CC
21. _5420_5
CG___AA_______________AAGGTT______CC
22. _5420_1_>_FP
CG___AA_______________AAGGTT______CC
23. _5420_2_>_FP
CG___AA_______________AAGGTT______CC
24. _5420_3_>_FP
CG___AA_______________AAGGTT______CC
25. _RUQ_357
_______________TTCC___AAGGTT___GGCC
26. _RUQ_357
CG___AA_______________AAGGTT______CC
27. _RUQ_357
CG___AA_______________AAGGTT______CC
28. _Marper_D_569
CG___AA_______________AAGGTT______CC
29. _Marper_D_569
CG___AA_______________AAGGTT______CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-03-015-2-03
CCAGGGCTAAAAGGAACCAAAGAAGGGG
2. _GC-03-015-2-03
CCAGGGCTAAAAGGAACCAAAGAAGGGG
3. _GC-03-015-2-03
CCAGGGCTAAAAGGAACCAAAGAAGGGG
4. _GC-03-015-2-03
CCAGGGCTAAAAGGAACCAAAGAAGGGG
5. _GC-03-015-2-03
CCAGGGCTAAAAGGAACCAAAGAAGGGG
6. _GC-03-015-2-03
CCAGGGCTAAAAGGAACCAAAGAAGGGG
7. _GC-05-167-4-20
CCAGGGCTAAAAGGAACCAAAGAAGGGG
8. _GC-05-167-4-20
CCAGGGCTAAAAGGAACCAAAGAAGGGG
9. _GC-05-167-4-20
CCAGGGCTAAAAGGAACCAAAGAAGGGG
10. _GC-05-167-4-20
CCAGGGCTAAAAGGAACCAAAGAAGGGG
11. _GC-05-167-4-20
CCAGGGCTAAAAGGAACCAAAGAAGGGG
12. _GC-03-15-2-3
GGAGGGAGTTAAGGAAGGAAAGAACC___
13. _GC-05-167-4-20
GGAGGGAGTTAAGGAAGGAAAGAACC___
14. _3203_3
CCAG___CT_________AA______AG______GG
15. _3203_5
CCAG___CT_________AA______AG______GG
16. _3203_9
CCAG___CT_________AA______AG______GG
17. _3203_10
CCAG___CT_________AA______AG______GG
18. _3203_1_>_FP
CCAG___CT_________AA______AG______GG
19. _3203_2_>_FP
CCAG___CT_________AA______AG______GG
20. _5420_4
CCAG___CT_________AA______AG______GG
21. _5420_5
CCAG___CT_________AA______AG______GG
22. _5420_1_>_FP
CCAG___CT_________AA______AG______GG
23. _5420_2_>_FP
CCAG___CT_________AA______AG______GG
24. _5420_3_>_FP
CCAG___CT_________AA______AG______GG
25. _RUQ_357
CCAG___CT___AAGGAA____________GGGG
26. _RUQ_357
CCAG___CT_________AA______AG______GG
27. _RUQ_357
CCAG___CT_________AA______AG______GG
28. _Marper_D_569
CCAG___CT_________AA______AG______GG
29. _Marper_D_569
CCAG___CT_________AA______AG______GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-03-015-2-03
___AAACCCAAGGGGCCCC___GGTTAGAA
2. _GC-03-015-2-03
___AAACCCAAGGGGCCCC___GGTTAGAA
3. _GC-03-015-2-03
___AAACCCAAGGGGCCCC___GGTTAGAA
4. _GC-03-015-2-03
___AAACCCAAGGGGCCCC___GGTTAGAA
5. _GC-03-015-2-03
___AAACCCAAGGGGCCCC___GGTTAGAA
6. _GC-03-015-2-03
___AAACCCAAGGGGCCCC___GGTTAGAA
7. _GC-05-167-4-20
___AAACCCAAGGGGCCCC___GGTTAGAA
8. _GC-05-167-4-20
___AAACCCAAGGGGCCCC___GGTTAGAA
9. _GC-05-167-4-20
___AAACCCAAGGGGCCCCCTGGTTAG___
10. _GC-05-167-4-20
___AAACCCAAGGGGCCCC___GGTTAGAA
11. _GC-05-167-4-20
___AAACCCAAGGGGCCCC___GGTTAGAA
12. _GC-03-15-2-3
GGAAAC___AACCGGCCCCAG___AA___AG
13. _GC-05-167-4-20
GGAAAC___AACCGGCCCCAG___AA___AG
14. _3203_3
______ACCC___GG___CCCC______TTAG___
15. _3203_5
______ACCC___GG___CCCC______TTAG___
16. _3203_9
______ACCC___GG___CCCC______TTAG___
17. _3203_10
______ACCC___GG___CCCC______TTAG___
18. _3203_1_>_FP
______ACCC___GG___CCCC______TTAG___
19. _3203_2_>_FP
______ACCC___GG___CCCC______TTAG___
20. _5420_4
______ACCC___GG___CCCC______TTAG___
21. _5420_5
______ACCC___GG___CCCC______TTAG___
22. _5420_1_>_FP
______ACCC___GG___CCCC______TTAG___
23. _5420_2_>_FP
______ACCC___GG___CCCC______TTAG___
24. _5420_3_>_FP
______ACCC___GG___CCCC______TTAG___
25. _RUQ_357
______ACCC___GG___CCCCCT___TT______
26. _RUQ_357
______ACCC___GG___CCCC______TTAA___
27. _RUQ_357
______ACCC___GG___CCCC______TTAA___
28. _Marper_D_569
______ACCC___GG___CCCC______TTAA___
29. _Marper_D_569
______ACCC___GG___CCCC______TTAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-03-015-2-03
AACTTTGGAATTGGTTCCCCAACCGGTT
2. _GC-03-015-2-03
AACTTTGGAATTGGTTCCCCAACCGGTT
3. _GC-03-015-2-03
AACTTTGGAATTGGTTCCCCAACCGGTT
4. _GC-03-015-2-03
AACTTTGGAATTGGTTCCCCAACCGGTT
5. _GC-03-015-2-03
AACTTTGGAATTGGTTCCCCAACCGGTT
6. _GC-03-015-2-03
AACTTTGGAATTGGTTCCCCAACCGGTT
7. _GC-05-167-4-20
AACTTTGGAATTGGTTCCCCAACCGGTT
8. _GC-05-167-4-20
AACTTTGGAATTGGTTCCCCAACCGGTT
9. _GC-05-167-4-20
AACT___GGAATTGGTTCCCCAACCGGTT
10. _GC-05-167-4-20
AACTTTGGAATTGGTTCCCCAACCGGTT
11. _GC-05-167-4-20
AACTTTGGAATTGGTTCCCCAACCGGTT
12. _GC-03-15-2-3
AA______CCAAAACCAACCGGAAGG___AA
13. _GC-05-167-4-20
AA______CCAAAACCAACCGGAAGG___AA
14. _3203_3
_________GG_____________________CC___TT
15. _3203_5
_________GG_____________________CC___TT
16. _3203_9
_________GG_____________________CC___TT
17. _3203_10
_________GG_____________________CC___TT
18. _3203_1_>_FP
_________GG_____________________CC___TT
19. _3203_2_>_FP
_________GG_____________________CC___TT
20. _5420_4
_________GG_____________________CC___TT
21. _5420_5
_________GG_____________________CC___TT
22. _5420_1_>_FP
_________GG_____________________CC___TT
23. _5420_2_>_FP
_________GG_____________________CC___TT
24. _5420_3_>_FP
_________GG_____________________CC___TT
25. _RUQ_357
______CTGGAA______TTCC______CCGGTT
26. _RUQ_357
_________GG_____________________CC___TT
27. _RUQ_357
_________GG_____________________CC___TT
28. _Marper_D_569
_________GG_____________________CC___TT
29. _Marper_D_569
_________GG_____________________CC___TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-03-015-2-03
CCAGCCCCCCTTCCAACCTTCCCCGGGG
2. _GC-03-015-2-03
CCAGCCCCCCTTCCAACCTTCCCCGGGG
3. _GC-03-015-2-03
CCAGCCCCCCTTCCAACCTTCCCCGGGG
4. _GC-03-015-2-03
CCAGCCCCCCTTCCAACCTTCCCCGGGG
5. _GC-03-015-2-03
CCAGCCCCCCTTCCAACCTTCCCCGGGG
6. _GC-03-015-2-03
CCAGCCCCCCTTCCAACCTTCCCCGGGG
7. _GC-05-167-4-20
CCAGCCCCCCTTCCAACCTTCCCCGGGG
8. _GC-05-167-4-20
CCAGCCCCCCTTCCAACCTTCCCCGGGG
9. _GC-05-167-4-20
CCAGCCCCCCTTCCAACCTTCCCCGGGG
10. _GC-05-167-4-20
CCAGCCCCCCTTCCAACCTTCCCCGGGG
11. _GC-05-167-4-20
CCAGCCCCCCTTCCAACCTTCCCCGGGG
12. _GC-03-15-2-3
GGAGGGCCGGTTGGAA___AA___GGGGCC
13. _GC-05-167-4-20
GGAGGGCCGGTTGGAA___AA___GGGGCC
14. _3203_3
______CCCC___TTCCAA_________CCGG___
15. _3203_5
______CCCC___TTCCAA_________CCGG___
16. _3203_9
______CCCC___TTCCAA_________CCGG___
17. _3203_10
______CCCC___TTCCAA_________CCGG___
18. _3203_1_>_FP
______CCCC___TTCCAA_________CCGG___
19. _3203_2_>_FP
______CCCC___TTCCAA_________CCGG___
20. _5420_4
______CCCC___TTCCAA_________CCGG___
21. _5420_5
______CCCC___TTCCAA_________CCGG___
22. _5420_1_>_FP
______CCCC___TTCCAA_________CCGG___
23. _5420_2_>_FP
______CCCC___TTCCAA_________CCGG___
24. _5420_3_>_FP
______CCCC___TTCCAA_________CCGG___
25. _RUQ_357
___-_______________AACC______CC___GG
26. _RUQ_357
______CCCC___TTCCAA_________CCGG___
27. _RUQ_357
______CCCC___TTCCAA_________CCGG___
28. _Marper_D_569
______CCCC___TTCCAA_________CCGG___
29. _Marper_D_569
______CCCC___TTCCAA_________CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-03-015-2-03
AATTGGTTCCCCCCTTTTCCGGTTTTCC
2. _GC-03-015-2-03
AATTGGTTCCCCCCTTTTCCGGTTTTCC
3. _GC-03-015-2-03
AATTGGTTCCCCCCTTTTCCGGTTTTCC
4. _GC-03-015-2-03
AATTGGTTCCCCCCTTTTCCGGTTTTCC
5. _GC-03-015-2-03
AATTGGTTCCCCCCTTTTCCGGTTTTCC
6. _GC-03-015-2-03
AATTGGTTCCCCCCTTTTCCGGTTTTCC
7. _GC-05-167-4-20
AATTGGTTCCCCCCTTTTCCGGTTTTCC
8. _GC-05-167-4-20
AATTGGTTCCCCCCTTTTCCGGTTTTCC
9. _GC-05-167-4-20
AATTGGTTCCCCCCTTTTCCGGTTTTCC
10. _GC-05-167-4-20
AATTGGTTCCCCCCTTTTCCGGTTTTCC
11. _GC-05-167-4-20
AATTGGTTCCCCCCTTTTCCGGTTTTCC
12. _GC-03-15-2-3
AAAAGG______GGGG___AA___CCAAAACC
13. _GC-05-167-4-20
AAAAGG______GGGG___AA___CCAAAACC
14. _3203_3
AA_________CC______TT______GGTT___CC
15. _3203_5
AA_________CC______TT______GGTT___CC
16. _3203_9
AA_________CC______TT______GGTT___CC
17. _3203_10
AA_________CC______TT______GGTT___CC
18. _3203_1_>_FP
AA_________CC______TT______GGTT___CC
19. _3203_2_>_FP
AA_________CC______TT______GGTT___CC
20. _5420_4
AA_________CC______TT______GGTT___CC
21. _5420_5
AA_________CC______TT______GGTT___CC
22. _5420_1_>_FP
AA_________CC______TT______GGTT___CC
23. _5420_2_>_FP
AA_________CC______TT______GGTT___CC
24. _5420_3_>_FP
AA_________CC______TT______GGTT___CC
25. _RUQ_357
______GGTT__________________GG___TT___
26. _RUQ_357
AA_________CC______TT______GGTT___CC
27. _RUQ_357
AA_________CC______TT______GGTT___CC
28. _Marper_D_569
AA_________CC______TT______GGTT___CC
29. _Marper_D_569
AA_________CC______TT______GGTT___CC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-03-015-2-03
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
2. _GC-03-015-2-03
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
3. _GC-03-015-2-03
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
4. _GC-03-015-2-03
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
5. _GC-03-015-2-03
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
6. _GC-03-015-2-03
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
7. _GC-05-167-4-20
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
8. _GC-05-167-4-20
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
9. _GC-05-167-4-20
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
10. _GC-05-167-4-20
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
11. _GC-05-167-4-20
AGCTCCCTCCAACCCCAACCGGCCX_XX_X
12. _GC-03-15-2-3
AGAGGGAGGGAAGGCC___CCGGCCX_XX_X
13. _GC-05-167-4-20
AGAGGGAGGGAAGGCC___CCGGCCX_XX_X
14. _3203_3
___CT___CTCCAACC_______________X_XX_X
15. _3203_5
___CT___CTCCAACC_______________X_XX_X
16. _3203_9
___CT___CTCCAACC_______________X_XX_X
17. _3203_10
___CT___CTCCAACC_______________X_XX_X
18. _3203_1_>_FP
___CT___CTCCAACC_______________X_XX_X
19. _3203_2_>_FP
___CT___CTCCAACC_______________X_XX_X
20. _5420_4
___CT___CTCCAACC_______________X_XX_X
21. _5420_5
___CT___CTCCAACC_______________X_XX_X
22. _5420_1_>_FP
___CT___CTCCAACC_______________X_XX_X
23. _5420_2_>_FP
___CT___CTCCAACC_______________X_XX_X
24. _5420_3_>_FP
___CT___CTCCAACC_______________X_XX_X
25. _RUQ_357
______CCCTCCAA__________________X_XX_X
26. _RUQ_357
___CT___CTCCAGCC_______________X_XX_X
27. _RUQ_357
___CT___CTCCAGCC_______________X_XX_X
28. _Marper_D_569
___CT___CTCCAACC_______________X_XX_X
29. _Marper_D_569
___CT___CTCCAACC_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SCA_24 GC-03-015-2-03
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._SCA_24 GC-03-015-2-03
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018
3._SCA_24 GC-03-015-2-03
Location: Tree: 3
Notes: 3
 Mars, 2018
4._SCA_24 GC-03-015-2-03
Location: Tree: 5
Notes: 5
 Mars, 2018
5._SCA_24 GC-03-015-2-03
Location: Tree: 9
Notes: 9
 Mars, 2018
6._SCA_24 GC-03-015-2-03
Location: Tree: 10
Notes: 10
 Mars, 2018
7._SCA_24 GC-05-167-4-20
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
8._SCA_24 GC-05-167-4-20
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
9._SCA_24 GC-05-167-4-20
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018
10._SCA_24 GC-05-167-4-20
Location: Tree: 4
Notes: 4
 Mars, 2018
11._SCA_24 GC-05-167-4-20
Location: Tree: 5
Notes: 5
 Mars, 2018
12._SCA_24 GC-03-15-2-3
Location: Field: 3, Block: 2, Rep: 3, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
13._SCA_24 GC-05-167-4-20
Location: Field: 5, Block: 4, Rep: 20, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
14._SCA_24
Location: 3203 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
15._SCA_24
Location: 3203 5
 Dapeng Zhang, 2016
16._SCA_24
Location: 3203 9
 Dapeng Zhang, 2016
17._SCA_24
Location: 3203 10
 Dapeng Zhang, 2016
18._SCA_24
Location: 3203 1 > FP
 Dapeng Zhang, 2016
19._SCA_24
Location: 3203 2 > FP
 Dapeng Zhang, 2016
20._SCA_24
Location: 5420 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
21._SCA_24
Location: 5420 5
 Dapeng Zhang, 2016
22._SCA_24
Location: 5420 1 > FP
 Dapeng Zhang, 2016
23._SCA_24
Location: 5420 2 > FP
 Dapeng Zhang, 2016
24._SCA_24
Location: 5420 3 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

25._SCA_24 RUQ 357
 Dapeng Zhang, 2014
26._SCA_24 RUQ 357
 Dapeng Zhang, 2016
27._SCA_24 RUQ 357
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

28._SCA_24
Location: Marper D 569
 Dapeng Zhang, 2016
29._SCA_24
Location: Marper D 569
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133