SNP Profiles of "LV 20 [POU]" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-04-027-2-09	___	___	CG	GG	TT	___	AG	___	___	CC	TT	CC	CC	___
2. _GC-04-027-2-09	___	___	CG	GG	TT	___	AG	___	___	CC	TT	CC	CC	___
3. _GC-04-027-2-09	___	___	CG	GG	TT	___	AG	___	___	CC	TT	CC	CC	___
4. _GC-04-027-2-09	___	___	CG	GG	TT	___	AG	___	___	CC	TT	CC	CC	___
5. _4209_1	___	___	CG	___	TT	___	___	___	___	___	___	___	___	___
6. _4209_3	___	___	CG	___	TT	___	___	___	___	___	___	___	___	___
7. _4209_4_>_FP	___	___	CG	___	TT	___	___	___	___	___	___	___	___	___
8. _4209_8_>_FP	___	___	CG	___	TT	___	___	___	___	___	___	___	___	___
9. _RUQ_354	CT	CC	___	___	___	CC	___	CC	GG	___	___	___	___	TT
10. _RUQ_354	___	___	CG	CC	TT	___	AG	___	___	GG	AA	CC	GG	___
11. _RUQ_354	___	___	___	___	___	___	___	___	___	___	TT	CC	___	___
12. _RUQ_354	___	___	CG	___	TT	___	___	___	___	___	___	___	___	___
13. _Marper_C_563	___	___	CG	___	TT	___	___	___	___	___	___	___	___	___
14. _Marper_C_562	___	___	CG	___	TT	___	___	___	___	___	___	___	___	___

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-04-027-2-09	___	CC	GT	CT	AA	GG	___	___	AC	___	CC	AA	GG	CC
2. _GC-04-027-2-09	___	CC	GT	CT	AA	GG	___	___	AC	___	CC	AA	GG	CC
3. _GC-04-027-2-09	___	CC	GT	CT	AA	GG	___	___	AC	___	CC	AA	GG	CC
4. _GC-04-027-2-09	___	CC	GT	CT	AA	GG	___	___	AC	___	CC	AA	GG	CC
5. _4209_1	___	CC	GT	CT	___	___	___	___	AC	___	CC	AA	___	CC
6. _4209_3	___	CC	GT	CT	___	___	___	___	AC	___	CC	AA	___	CC
7. _4209_4_>_FP	___	CC	GT	CT	___	___	___	___	AC	___	CC	AA	___	CC
8. _4209_8_>_FP	___	CC	GT	CT	___	___	___	___	AC	___	CC	AA	___	CC
9. _RUQ_354	TT	CC	___	___	___	___	CC	GG	___	TT	___	AA	___	___
10. _RUQ_354	___	CC	AC	AG	TT	GG	___	___	AC	___	GG	AA	GG	GG
11. _RUQ_354	___	CC	GT	CT	___	GG	___	___	AC	___	CC	AA	___	CC
12. _RUQ_354	___	CC	GT	CT	___	___	___	___	AC	___	CC	AA	___	CC
13. _Marper_C_563	___	CC	GT	CT	___	___	___	___	AC	___	CC	AA	___	CC
14. _Marper_C_562	___	CC	GT	CT	___	___	___	___	AC	___	CC	AA	___	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-04-027-2-09	___	___	AA	GG	AG	AA	TT	AG	___	GG	AA	CC	AG	___
2. _GC-04-027-2-09	___	___	AA	GG	AG	AA	TT	AG	___	GG	AA	CC	AG	___
3. _GC-04-027-2-09	___	___	AA	GG	AG	AA	TT	AG	___	GG	AA	CC	AG	___
4. _GC-04-027-2-09	___	___	AA	GG	AG	AA	TT	AG	___	GG	AA	CC	AG	___
5. _4209_1	___	___	___	___	___	AA	___	___	___	GG	___	___	AG	___
6. _4209_3	___	___	___	___	___	AA	___	___	___	GG	___	___	AG	___
7. _4209_4_>_FP	___	___	___	___	___	AA	___	___	___	GG	___	___	AG	___
8. _4209_8_>_FP	___	___	___	___	___	AA	___	___	___	GG	___	___	AG	___
9. _RUQ_354	CT	AA	___	GG	___	___	___	___	TT	___	___	___	___	___
10. _RUQ_354	___	___	TT	GG	AG	AA	AA	AG	___	GG	AA	GG	___	AG
11. _RUQ_354	___	___	___	GG	AG	AA	___	___	___	___	___	CC	AG	___
12. _RUQ_354	___	___	___	___	___	AA	___	___	___	GG	___	___	AG	___
13. _Marper_C_563	___	___	___	___	___	AA	___	___	___	GG	___	___	AG	___
14. _Marper_C_562	___	___	___	___	___	AA	___	___	___	GG	___	___	AG	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-04-027-2-09	___	CC	___	CC	TT	___	GG	GT	AA	CG	___	CC	CT	AA
2. _GC-04-027-2-09	___	CC	___	CC	TT	___	GG	GT	AA	CG	___	CC	CT	AA
3. _GC-04-027-2-09	___	CC	___	CC	TT	___	GG	GT	AA	CG	___	CC	CT	AA
4. _GC-04-027-2-09	___	CC	___	CC	TT	___	GG	GT	AA	CG	___	CC	CT	AA
5. _4209_1	___	___	___	CC	TT	___	___	GT	___	CG	___	CC	___	___
6. _4209_3	___	___	___	CC	TT	___	___	GT	___	CG	___	CC	___	___
7. _4209_4_>_FP	___	___	___	CC	TT	___	___	GT	___	CG	___	CC	___	___
8. _4209_8_>_FP	___	___	___	CC	TT	___	___	GT	___	CG	___	CC	___	___
9. _RUQ_354	AC	___	CT	CC	___	AA	___	___	___	CG	AA	CC	CT	___
10. _RUQ_354	___	CC	___	CC	___	___	GG	AC	AA	CG	___	CC	AG	___
11. _RUQ_354	___	___	___	CC	TT	___	___	GT	___	CG	___	CC	CT	___
12. _RUQ_354	___	___	___	CC	TT	___	___	GT	___	CG	___	CC	___	___
13. _Marper_C_563	___	___	___	CC	TT	___	___	GT	___	CG	___	CC	___	___
14. _Marper_C_562	___	___	___	CC	TT	___	___	GT	___	CG	___	CC	___	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-04-027-2-09	TT	___	___	___	AG	AA	___	AA	CC	CT	GT	AG	___	TT
2. _GC-04-027-2-09	TT	___	___	___	AG	AA	___	AA	CC	CT	GT	AG	___	TT
3. _GC-04-027-2-09	TT	___	___	___	AG	AA	___	AA	CC	CT	GT	AG	___	TT
4. _GC-04-027-2-09	TT	___	___	___	AG	AA	___	AA	CC	CT	GT	AG	___	TT
5. _4209_1	TT	___	___	___	AG	___	___	___	___	___	GT	___	___	___
6. _4209_3	TT	___	___	___	AG	___	___	___	___	___	GT	___	___	___
7. _4209_4_>_FP	TT	___	___	___	AG	___	___	___	___	___	GT	___	___	___
8. _4209_8_>_FP	TT	___	___	___	AG	___	___	___	___	___	GT	___	___	___
9. _RUQ_354	___	CT	AA	CC	GG	___	CG	___	___	CC	GT	AG	TT	___
10. _RUQ_354	AA	___	___	___	___	AG	___	AA	___	___	AC	AG	___	AA
11. _RUQ_354	TT	___	___	___	___	___	___	___	___	CC	GT	AG	___	___
12. _RUQ_354	TT	___	___	___	GG	___	___	___	___	___	GT	___	___	___
13. _Marper_C_563	TT	___	___	___	GG	___	___	___	___	___	GT	___	___	___
14. _Marper_C_562	TT	___	___	___	GG	___	___	___	___	___	GT	___	___	___

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-04-027-2-09	TT	TT	___	AC	___	GG	AA	GG	CG	CT	CG	AG	CT	GG
2. _GC-04-027-2-09	TT	TT	___	AC	___	GG	AA	GG	CG	CT	CG	AG	CT	GG
3. _GC-04-027-2-09	TT	TT	___	AC	___	GG	AA	GG	CG	CT	CG	AG	CT	GG
4. _GC-04-027-2-09	TT	TT	___	AC	___	GG	AA	GG	CG	CT	CG	AG	CT	GG
5. _4209_1	___	___	___	___	___	___	___	GG	___	CT	___	___	CT	GG
6. _4209_3	___	___	___	___	___	___	___	GG	___	CT	___	___	CT	GG
7. _4209_4_>_FP	___	___	___	___	___	___	___	GG	___	CT	___	___	CT	GG
8. _4209_8_>_FP	___	___	___	___	___	___	___	GG	___	CT	___	___	CT	GG
9. _RUQ_354	___	___	TT	AC	AA	CT	___	GG	___	___	___	AG	___	___
10. _RUQ_354	AA	AA	___	AC	___	CC	AA	CC	___	AG	CG	AG	AG	GG
11. _RUQ_354	___	TT	___	AC	___	___	___	GG	CG	TT	___	-	___	___
12. _RUQ_354	___	___	___	___	___	___	___	GG	___	CT	___	___	CT	GG
13. _Marper_C_563	___	___	___	___	___	___	___	GG	___	CT	___	___	CT	GG
14. _Marper_C_562	___	___	___	___	___	___	___	GG	___	CT	___	___	CT	GG

	85	86	87	88	89	90	91	92	93	94	95	96	97	98
1. _GC-04-027-2-09	CC	___	AT	TT	AG	TT	___	___	TT	CC	___	CC	AG	GG
2. _GC-04-027-2-09	CC	___	AT	TT	AG	TT	___	___	TT	CC	___	CC	AG	GG
3. _GC-04-027-2-09	CC	___	AT	TT	AG	TT	___	___	TT	CC	___	CC	AG	GG
4. _GC-04-027-2-09	CC	___	AT	TT	AG	TT	___	___	TT	CC	___	CC	AG	GG
5. _4209_1	___	___	AT	TT	AG	___	___	___	___	___	___	CC	AG	___
6. _4209_3	___	___	AT	TT	AG	___	___	___	___	___	___	CC	AG	___
7. _4209_4_>_FP	___	___	AT	TT	AG	___	___	___	___	___	___	CC	AG	___
8. _4209_8_>_FP	___	___	AT	TT	AG	___	___	___	___	___	___	CC	AG	___
9. _RUQ_354	___	CC	___	___	AG	TT	TT	AA	___	___	CT	___	AG	___
10. _RUQ_354	GG	___	AT	AA	AG	___	___	___	AA	___	___	GG	AG	CC
11. _RUQ_354	___	___	___	___	AG	TT	___	___	___	___	___	CC	___	GG
12. _RUQ_354	___	___	AT	TT	AG	___	___	___	___	___	___	CC	AG	___
13. _Marper_C_563	___	___	AT	TT	AG	___	___	___	___	___	___	CC	AG	___
14. _Marper_C_562	___	___	AT	TT	AG	___	___	___	___	___	___	CC	AG	___

	99	100	101	102	103	104	105	106	107	108	109	110	111	112
1. _GC-04-027-2-09	AT	CT	AG	___	TT	CT	TT	TT	CC	GG	___	___	AC	GT
2. _GC-04-027-2-09	AT	CT	AG	___	TT	CT	TT	TT	CC	GG	___	___	AC	GT
3. _GC-04-027-2-09	AT	CT	AG	___	TT	CT	TT	TT	CC	GG	___	___	AC	GT
4. _GC-04-027-2-09	AT	CT	AG	___	TT	CT	TT	TT	CC	GG	___	___	AC	GT
5. _4209_1	AT	___	___	___	___	CT	___	___	CC	___	___	___	___	GT
6. _4209_3	AT	___	___	___	___	CT	___	___	CC	___	___	___	___	GT
7. _4209_4_>_FP	AT	___	___	___	___	CT	___	___	CC	___	___	___	___	GT
8. _4209_8_>_FP	AT	___	___	___	___	CT	___	___	CC	___	___	___	___	GT
9. _RUQ_354	___	___	___	CT	___	CT	___	___	___	___	TT	AA	___	GT
10. _RUQ_354	AT	AG	AG	___	___	___	AA	AA	___	CC	___	___	___	AC
11. _RUQ_354	___	___	AG	___	TT	___	___	___	___	___	___	___	___	GT
12. _RUQ_354	AT	___	___	___	___	CT	___	___	CC	___	___	___	___	GT
13. _Marper_C_563	AT	___	___	___	___	CT	___	___	CC	___	___	___	___	GT
14. _Marper_C_562	AT	___	___	___	___	CT	___	___	CC	___	___	___	___	GT

	113	114	115	116	117	118	119	120	121	122	123	124	125	126
1. _GC-04-027-2-09	CT	___	___	TT	AA	GG	___	___	CT	CT	CT	CG	AG	TT
2. _GC-04-027-2-09	CT	___	___	TT	AA	GG	___	___	CT	CT	CT	CG	AG	TT
3. _GC-04-027-2-09	CT	___	___	TT	AA	GG	___	___	CT	CT	CT	CG	AG	TT
4. _GC-04-027-2-09	CT	___	___	TT	AA	GG	___	___	CT	CT	CT	CG	AG	TT
5. _4209_1	CT	___	___	___	AA	___	___	___	CT	___	CT	CG	AG	TT
6. _4209_3	CT	___	___	___	AA	___	___	___	CT	___	CT	CG	AG	TT
7. _4209_4_>_FP	CT	___	___	___	AA	___	___	___	CT	___	CT	CG	AG	TT
8. _4209_8_>_FP	CT	___	___	___	AA	___	___	___	CT	___	CT	CG	AG	TT
9. _RUQ_354	___	GT	TT	___	___	___	AG	GG	___	___	___	CG	___	___
10. _RUQ_354	AG	___	___	AA	AC	GG	___	___	AG	AG	AG	CG	AG	AA
11. _RUQ_354	___	___	___	TT	___	___	___	___	___	CT	CT	CG	AG	___
12. _RUQ_354	CT	___	___	___	AC	___	___	___	CT	___	CT	CG	AG	TT
13. _Marper_C_563	CT	___	___	___	AC	___	___	___	CT	___	CT	CG	AG	TT
14. _Marper_C_562	CT	___	___	___	AC	___	___	___	CT	___	CT	CG	AG	TT

	127	128	129	130	131	132	133
1. _GC-04-027-2-09	___	___	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2. _GC-04-027-2-09	___	___	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3. _GC-04-027-2-09	___	___	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4. _GC-04-027-2-09	___	___	CC	AA	AC	AG	AC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5. _4209_1	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6. _4209_3	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7. _4209_4_>_FP	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8. _4209_8_>_FP	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9. _RUQ_354	TT	AT	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10. _RUQ_354	___	___	CC	___	AC	AG	AC	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11. _RUQ_354	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12. _RUQ_354	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13. _Marper_C_563	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14. _Marper_C_562	___	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Mars Center for Cocoa Science Brazil

1._LV_20_[POU] GC-04-027-2-09

Location: Tree: 1

Notes: 1

2._LV_20_[POU] GC-04-027-2-09

Location: Tree: 3

Notes: 3

3._LV_20_[POU] GC-04-027-2-09

Location: Tree: 4

Notes: 4 > FP4

4._LV_20_[POU] GC-04-027-2-09

Location: Tree: 8

Notes: 8 > FP3

5._LV_20_[POU]

Location: 4209 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._LV_20_[POU]

Location: 4209 3

Dapeng Zhang, 2016

7._LV_20_[POU]

Location: 4209 4 > FP

Dapeng Zhang, 2016

8._LV_20_[POU]

Location: 4209 8 > FP

Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

9._LV_20_[POU] RUQ 354

Lambert Motilal, 2023

10._LV_20_[POU] RUQ 354

Notes: Reading_Collection

11._LV_20_[POU] RUQ 354

Dapeng Zhang, 2014

12._LV_20_[POU] RUQ 354

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

13._LV_20_[POU]

Location: Marper C 563

Dapeng Zhang, 2016

14._LV_20_[POU]

Location: Marper C 562

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP25	4	TcSNP28	5	TcSNP32
6	TcSNP33	7	TcSNP42	8	TcSNP49	9	TcSNP52	10	TcSNP60
11	TcSNP75	12	TcSNP90	13	TcSNP122	14	TcSNP131	15	TcSNP143
16	TcSNP144	17	TcSNP150	18	TcSNP151	19	TcSNP154	20	TcSNP174
21	TcSNP176	22	TcSNP189	23	TcSNP193	24	TcSNP194	25	TcSNP226
26	TcSNP230	27	TcSNP240	28	TcSNP242	29	TcSNP290	30	TcSNP305
31	TcSNP316	32	TcSNP329	33	TcSNP364	34	TcSNP372	35	TcSNP413
36	TcSNP418	37	TcSNP421	38	TcSNP429	39	TcSNP430	40	TcSNP448
41	TcSNP469	42	TcSNP497	43	TcSNP519	44	TcSNP521	45	TcSNP522
46	TcSNP529	47	TcSNP534	48	TcSNP546	49	TcSNP547	50	TcSNP560
51	TcSNP561	52	TcSNP577	53	TcSNP589	54	TcSNP591	55	TcSNP602
56	TcSNP606	57	TcSNP619	58	TcSNP640	59	TcSNP642	60	TcSNP644
61	TcSNP645	62	TcSNP653	63	TcSNP660	64	TcSNP689	65	TcSNP701
66	TcSNP702	67	TcSNP723	68	TcSNP731	69	TcSNP739	70	TcSNP751
71	TcSNP776	72	TcSNP799	73	TcSNP800	74	TcSNP823	75	TcSNP835
76	TcSNP836	77	TcSNP860	78	TcSNP872	79	TcSNP878	80	TcSNP891
81	TcSNP894	82	TcSNP899	83	TcSNP917	84	TcSNP929	85	TcSNP944
86	TcSNP945	87	TcSNP953	88	TcSNP994	89	TcSNP998	90	TcSNP999
91	TcSNP1010	92	TcSNP1019	93	TcSNP1034	94	TcSNP1041	95	TcSNP1053
96	TcSNP1060	97	TcSNP1062	98	TcSNP1063	99	TcSNP1075	100	TcSNP1096
101	TcSNP1111	102	TcSNP1112	103	TcSNP1126	104	TcSNP1144	105	TcSNP1149
106	TcSNP1156	107	TcSNP1165	108	TcSNP1175	109	TcSNP1205	110	TcSNP1230
111	TcSNP1242	112	TcSNP1253	113	TcSNP1270	114	TcSNP1275	115	TcSNP1293
116	TcSNP1309	117	TcSNP1350	118	TcSNP1383	119	TcSNP1401	120	TcSNP1404
121	TcSNP1414	122	TcSNP1439	123	TcSNP1442	124	TcSNP1458	125	TcSNP1484
126	TcSNP1520	127	TcSNP1524	128	TcSNP1527	129	Tcm001s00947643	130	Tcm002s20575712
131	Tcm003s01336581	132	Tcm003s07402719	133	Tcm006s26664133