SNP Profiles of "LCT EEN 46" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-03-033-3-12	CC	GG	AA	AA	CC	TT	CC	CC	AC	TT	CC	AA	GG	CC
2. _GC-03-033-3-12	CC	GG	AA	AA	CC	TT	CC	CC	AC	TT	CC	AA	GG	CC
3. _GC-03-033-3-12	GG	GG	AT	AG	CC	CT	CC	CT	___	GG	TT	AT	AG	CC
4. _GC-03-033-3-12	GG	GG	AT	AG	CC	CT	CC	CT	AC	GG	TT	AT	AG	CC
5. _GC-03-033-3-12	GG	GT	TT	GG	CC	TT	CC	TT	AA	GT	CT	AA	GG	AC
6. _GC-03-033-3-12	CC	GG	AA	AA	CC	TT	CC	CC	AC	TT	CC	AA	GG	CC
7. _GC-03-033-3-12	CC	GG	AA	AA	CC	TT	CC	CC	AC	TT	CC	AA	GG	CC
8. _GC-03-033-3-12	CC	GG	AA	AA	CC	TT	CC	CC	AC	TT	CC	AA	GG	CC
9. _478	CC	___	AA	___	___	___	___	___	AC	TT	CC	___	___	CC
10. _3312_2	CC	___	AA	___	___	___	___	___	AC	TT	CC	___	___	CC
11. _3312_7	CC	___	AA	___	___	___	___	___	AC	TT	CC	___	___	CC
12. _3312_9	CC	___	AA	___	___	___	___	___	AC	TT	CC	___	___	CC
13. _3312_10	CC	___	AA	___	___	___	___	___	AC	TT	CC	___	___	CC
14. _3312_1_>_FP	CC	___	AA	___	___	___	___	___	AC	TT	CC	___	___	CC
15. _3312_4_>_FP	GG	___	AT	___	___	___	___	___	___	GG	TT	___	___	CC
16. _3312_5_>_FP	GG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	CC
17. _3312_6	GG	___	TT	___	___	___	___	___	AA	GT	CT	___	___	AC
18. _4A_A_17_T1	CC	___	AA	___	___	___	___	___	AC	TT	CC	___	___	CC
19. _MITC-000412	GG	CC	TT	GG	GG	AA	CC	AA	CC	AA	GG	TT	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-03-033-3-12	CC	AA	GG	CC	AT	GG	AA	AT	TT	AG	AG	AA	CG	AG
2. _GC-03-033-3-12	CC	AA	GG	CC	AT	GG	AA	AT	TT	AG	AG	AA	CG	AG
3. _GC-03-033-3-12	CC	AG	GG	CC	AT	GG	GG	AT	CC	AG	AA	AA	CG	AG
4. _GC-03-033-3-12	CC	AG	GG	CC	AT	GG	GG	AT	CC	AG	AA	AA	CG	AG
5. _GC-03-033-3-12	CC	AA	GG	CC	AA	GG	GG	AA	CC	AG	GG	AT	CC	AG
6. _GC-03-033-3-12	CC	AA	GG	CC	AT	GG	AA	AT	TT	AG	AG	AA	CG	AG
7. _GC-03-033-3-12	CC	AA	GG	CC	AT	GG	AA	AT	TT	AG	AG	AA	CG	AG
8. _GC-03-033-3-12	CC	AA	GG	CC	AT	GG	AA	AT	TT	AG	AG	AA	CG	AG
9. _478	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
10. _3312_2	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
11. _3312_7	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
12. _3312_9	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
13. _3312_10	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
14. _3312_1_>_FP	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
15. _3312_4_>_FP	CC	AG	___	CC	___	___	___	AT	___	___	AA	___	___	AG
16. _3312_5_>_FP	CC	AG	___	CC	___	___	___	AT	___	___	AA	___	___	AG
17. _3312_6	CC	AA	___	CC	___	___	___	AA	___	___	GG	___	___	AG
18. _4A_A_17_T1	CC	AA	___	CC	___	___	___	AT	___	___	AG	___	___	AG
19. _MITC-000412	GG	AA	GG	GG	TT	GG	GG	AA	AA	GG	GG	TT	GG	___

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-03-033-3-12	___	AC	AA	CT	GG	GT	GG	CC	CC	TT	AA	TT	AA	AA
2. _GC-03-033-3-12	___	AC	AA	CT	GG	GT	GG	CC	CC	TT	AA	TT	AA	AA
3. _GC-03-033-3-12	___	AA	AA	CC	AG	GG	GG	GG	CC	CC	AG	TT	AA	AA
4. _GC-03-033-3-12	___	AA	AA	CC	AG	GG	GG	GG	CC	CC	AG	TT	AA	AA
5. _GC-03-033-3-12	___	___	CC	TT	AG	GT	AA	CC	AC	TT	AA	TT	AG	AA
6. _GC-03-033-3-12	___	AC	AA	CT	GG	GT	GG	CC	CC	TT	AA	TT	AA	AA
7. _GC-03-033-3-12	___	AC	AA	CT	GG	GT	GG	CC	CC	TT	AA	TT	AA	AA
8. _GC-03-033-3-12	___	AC	AA	CT	GG	GT	GG	CC	CC	TT	AA	TT	AA	AA
9. _478	___	___	AA	CT	___	GT	___	CC	CC	___	___	TT	AG	___
10. _3312_2	___	___	AA	CT	___	GT	___	CC	CC	___	___	TT	AA	___
11. _3312_7	___	___	AA	CT	___	GT	___	CC	CC	___	___	TT	AA	___
12. _3312_9	___	___	AA	CT	___	GT	___	CC	CC	___	___	TT	AA	___
13. _3312_10	___	___	AA	CT	___	GT	___	CC	CC	___	___	TT	AA	___
14. _3312_1_>_FP	___	___	AA	CT	___	GT	___	CC	CC	___	___	TT	AA	___
15. _3312_4_>_FP	___	___	AA	CC	___	GG	___	GG	CC	___	___	TT	AA	___
16. _3312_5_>_FP	___	___	AA	CC	___	GG	___	GG	CC	___	___	TT	AA	___
17. _3312_6	___	___	CC	TT	___	GT	___	CC	AC	___	___	TT	AG	___
18. _4A_A_17_T1	___	___	AA	CT	___	GT	___	CC	CC	___	___	TT	AG	___
19. _MITC-000412	AA	CC	CC	___	GG	AA	AA	CC	AA	AA	___	AA	___	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-03-033-3-12	AA	TT	TT	GG	AG	TT	TT	TT	CC	GG	AA	GG	GG	CT
2. _GC-03-033-3-12	AA	TT	TT	GG	AG	TT	TT	TT	CC	GG	AA	GG	GG	CT
3. _GC-03-033-3-12	AG	CT	TT	GT	AG	TT	GT	TT	AC	CC	AA	CC	CG	TT
4. _GC-03-033-3-12	AG	CT	TT	GT	AG	TT	GT	TT	AC	CC	AA	CC	CG	TT
5. _GC-03-033-3-12	AA	TT	CT	GG	AG	TT	GG	TT	AC	GG	___	GG	CC	CC
6. _GC-03-033-3-12	AA	TT	TT	GG	AG	TT	TT	TT	CC	GG	AA	GG	GG	CT
7. _GC-03-033-3-12	AA	TT	TT	GG	AG	TT	TT	TT	CC	GG	AA	GG	GG	CT
8. _GC-03-033-3-12	AA	TT	TT	GG	AG	TT	TT	TT	CC	GG	AA	GG	GG	CT
9. _478	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
10. _3312_2	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
11. _3312_7	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
12. _3312_9	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
13. _3312_10	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
14. _3312_1_>_FP	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
15. _3312_4_>_FP	___	___	___	GT	___	___	___	___	___	___	___	CC	___	TT
16. _3312_5_>_FP	___	___	___	GT	___	___	___	___	___	___	___	CC	___	TT
17. _3312_6	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CC
18. _4A_A_17_T1	___	___	___	GG	___	___	___	___	___	___	___	GG	___	CT
19. _MITC-000412	AA	___	___	CC	GG	AA	AA	AA	AA	CC	GG	CC	___	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-03-033-3-12	CC	GG	CT	GG	CT	AA	TT	AA	TT	TT	CC	CT	GG	GG
2. _GC-03-033-3-12	CC	GG	CT	GG	CT	AA	TT	AA	TT	TT	CC	CT	GG	GG
3. _GC-03-033-3-12	CC	GG	CT	GG	CC	AT	CT	AA	CC	TT	CC	CC	GG	GG
4. _GC-03-033-3-12	CC	GG	CT	GG	CC	AT	CT	AA	CC	TT	CC	CC	GG	GG
5. _GC-03-033-3-12	CC	AG	CT	GG	CC	AT	TT	AG	CC	TT	CC	CC	AA	GG
6. _GC-03-033-3-12	CC	GG	CT	GG	CT	AA	TT	AA	TT	TT	CC	CT	GG	GG
7. _GC-03-033-3-12	CC	GG	CT	GG	CT	AA	TT	AA	TT	TT	CC	CT	GG	GG
8. _GC-03-033-3-12	CC	GG	CT	GG	CT	AA	TT	AA	TT	TT	CC	CT	GG	GG
9. _478	___	___	CT	GG	___	AA	TT	AA	___	___	___	CT	GG	___
10. _3312_2	___	___	CT	GG	___	AA	TT	AA	___	___	___	CT	GG	___
11. _3312_7	___	___	CT	GG	___	AA	TT	AA	___	___	___	CT	GG	___
12. _3312_9	___	___	CT	GG	___	AA	TT	AA	___	___	___	CT	GG	___
13. _3312_10	___	___	CT	GG	___	AA	TT	AA	___	___	___	CT	GG	___
14. _3312_1_>_FP	___	___	CT	GG	___	AA	TT	AA	___	___	___	CT	GG	___
15. _3312_4_>_FP	___	___	CT	GG	___	AT	CT	AA	___	___	___	CC	GG	___
16. _3312_5_>_FP	___	___	CT	GG	___	AT	CT	AA	___	___	___	CC	GG	___
17. _3312_6	___	___	CT	GG	___	AT	TT	AG	___	___	___	CC	AA	___
18. _4A_A_17_T1	___	___	CT	GG	___	AA	TT	AA	___	___	___	CT	GG	___
19. _MITC-000412	GG	AA	AA	GG	GG	AA	AA	GG	___	AA	___	GG	AA	CC

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-03-033-3-12	TT	CT	AG	TT	CC	CT	___	CT	TT	AC	GT	CT	TT	___
2. _GC-03-033-3-12	TT	CT	AG	TT	CC	CT	TT	CT	TT	AC	___	CT	TT	___
3. _GC-03-033-3-12	AA	TT	GG	TT	CC	CT	CC	TT	GT	AC	GG	CT	TT	AC
4. _GC-03-033-3-12	AA	TT	GG	TT	CC	CT	CC	TT	GT	AC	GG	CT	___	AC
5. _GC-03-033-3-12	AA	CT	AG	TT	CT	TT	CT	CC	GT	AC	TT	CC	TT	AC
6. _GC-03-033-3-12	TT	CT	AG	TT	CC	CT	TT	CT	TT	AC	GT	CT	TT	___
7. _GC-03-033-3-12	TT	CT	AG	TT	CC	CT	TT	CT	TT	AC	GT	CT	TT	___
8. _GC-03-033-3-12	TT	CT	AG	TT	CC	CT	TT	CT	TT	AC	GT	CT	TT	___
9. _478	TT	___	___	___	CC	___	___	CT	___	___	GT	CT	___	CC
10. _3312_2	TT	___	___	___	CC	___	___	CT	___	___	___	CT	___	___
11. _3312_7	TT	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___
12. _3312_9	TT	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___
13. _3312_10	TT	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___
14. _3312_1_>_FP	TT	___	___	___	CC	___	___	CT	___	___	GT	CT	___	___
15. _3312_4_>_FP	AA	___	___	___	CC	___	___	TT	___	___	GG	CT	___	AC
16. _3312_5_>_FP	AA	___	___	___	CC	___	___	TT	___	___	GG	CT	___	AC
17. _3312_6	AA	___	___	___	CT	___	___	CC	___	___	TT	CC	___	AC
18. _4A_A_17_T1	TT	___	___	___	CC	___	___	CT	___	___	GT	CT	___	CC
19. _MITC-000412	AA	GG	GG	___	___	AA	AA	___	CC	___	AA	GG	AA	AA

	85	86	87	88	89	90	91	92	93	94	95	96
1. _GC-03-033-3-12	GG	CC	CC	TT	CG	AG	TT	AA	AA	AC	GG	AC	X_X	X_X
2. _GC-03-033-3-12	GG	CC	CC	TT	CG	AG	TT	AA	AA	AC	GG	AC	X_X	X_X
3. _GC-03-033-3-12	GG	CT	CC	TT	CC	GG	CC	AC	AA	AC	AG	CC	X_X	X_X
4. _GC-03-033-3-12	GG	CT	CC	TT	CC	GG	CC	AC	AA	AC	AG	CC	X_X	X_X
5. _GC-03-033-3-12	AG	TT	CT	CC	GG	AG	CT	CC	AA	CC	AA	AA	X_X	X_X
6. _GC-03-033-3-12	GG	CC	CC	TT	CG	AG	TT	AA	AA	AC	GG	AC	X_X	X_X
7. _GC-03-033-3-12	GG	CC	CC	TT	CG	AG	TT	AA	AA	AC	GG	AC	X_X	X_X
8. _GC-03-033-3-12	GG	CC	CC	TT	CG	AG	TT	AA	AA	AC	GG	AC	X_X	X_X
9. _478	___	CC	___	TT	CG	AG	TT	___	___	___	___	___	X_X	X_X
10. _3312_2	___	CC	___	TT	CG	AG	TT	___	___	___	___	___	X_X	X_X
11. _3312_7	___	CC	___	TT	CG	AG	TT	___	___	___	___	___	X_X	X_X
12. _3312_9	___	CC	___	TT	CG	AG	TT	___	___	___	___	___	X_X	X_X
13. _3312_10	___	CC	___	TT	CG	AG	TT	___	___	___	___	___	X_X	X_X
14. _3312_1_>_FP	___	CC	___	TT	CG	AG	TT	___	___	___	___	___	X_X	X_X
15. _3312_4_>_FP	___	CT	___	TT	CC	GG	CC	___	___	___	___	___	X_X	X_X
16. _3312_5_>_FP	___	CT	___	TT	CC	GG	CC	___	___	___	___	___	X_X	X_X
17. _3312_6	___	TT	___	CC	GG	AG	CT	___	___	___	___	___	X_X	X_X
18. _4A_A_17_T1	___	CC	___	TT	CG	AG	TT	___	___	___	___	___	X_X	X_X
19. _MITC-000412	GG	AA	AA	GG	CC	AA	AA	CC	___	CC	AA	AA	X_X	X_X

Mars Center for Cocoa Science Brazil

1._LCT_EEN_46 GC-03-033-3-12

Location: Tree: 1

Notes: 1 > FP1

2._LCT_EEN_46 GC-03-033-3-12

Location: Tree: 2

Notes: 2

3._LCT_EEN_46 GC-03-033-3-12

Location: Tree: 4

Notes: 4 > FP2

4._LCT_EEN_46 GC-03-033-3-12

Location: Tree: 5

Notes: 5 > FP3

5._LCT_EEN_46 GC-03-033-3-12

Location: Tree: 6

Notes: 6

6._LCT_EEN_46 GC-03-033-3-12

Location: Tree: 7

Notes: 7

7._LCT_EEN_46 GC-03-033-3-12

Location: Tree: 9

Notes: 9

8._LCT_EEN_46 GC-03-033-3-12

Location: Tree: 10

Notes: 10

9._LCT_EEN_46

Location: 478

Dapeng Zhang, 2016

10._LCT_EEN_46

Location: 3312 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._LCT_EEN_46

Location: 3312 7

Dapeng Zhang, 2016

12._LCT_EEN_46

Location: 3312 9

Dapeng Zhang, 2016

13._LCT_EEN_46

Location: 3312 10

Dapeng Zhang, 2016

14._LCT_EEN_46

Location: 3312 1 > FP

Dapeng Zhang, 2016

15._LCT_EEN_46

Location: 3312 4 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._LCT_EEN_46

Location: 3312 5 > FP

Dapeng Zhang, 2016

17._LCT_EEN_46

Location: 3312 6

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

18._LCT_EEN_46

Location: 4A A 17 T1

Dapeng Zhang, 2016

USDA-SHRS United States of America

19._LCT_EEN_46 MITC-000412

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP701	45	TcSNP702
46	TcSNP723	47	TcSNP731	48	TcSNP751	49	TcSNP776	50	TcSNP799
51	TcSNP823	52	TcSNP836	53	TcSNP860	54	TcSNP872	55	TcSNP878
56	TcSNP891	57	TcSNP894	58	TcSNP899	59	TcSNP917	60	TcSNP929
61	TcSNP944	62	TcSNP953	63	TcSNP994	64	TcSNP998	65	TcSNP999
66	TcSNP1034	67	TcSNP1041	68	TcSNP1060	69	TcSNP1062	70	TcSNP1063
71	TcSNP1075	72	TcSNP1096	73	TcSNP1111	74	TcSNP1126	75	TcSNP1144
76	TcSNP1149	77	TcSNP1156	78	TcSNP1165	79	TcSNP1175	80	TcSNP1242
81	TcSNP1253	82	TcSNP1270	83	TcSNP1309	84	TcSNP1350	85	TcSNP1383
86	TcSNP1414	87	TcSNP1439	88	TcSNP1442	89	TcSNP1458	90	TcSNP1484
91	TcSNP1520	92	Tcm001s00947643	93	Tcm002s20575712	94	Tcm003s01336581	95	Tcm003s07402719
96	Tcm006s26664133