SNP Profiles of "IMC 2" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-04-042-3-06	CG	GG	TT	GG	CC	TT	CC	TT	CC	TT	CT	TT	GG	AC
2. _GC-04-042-3-06	CG	GG	TT	GG	CC	TT	CC	TT	CC	TT	CT	TT	GG	AC
3. _GC-04-042-3-06	CG	GG	TT	GG	CC	TT	CC	TT	CC	TT	CT	TT	GG	AC
4. _GC-04-042-3-06	CG	GG	TT	GG	CC	TT	CC	TT	CC	TT	CT	TT	GG	AC
5. _GC-04-42-3-6	CG	CC	TT	GG	GG	AA	CC	AA	CC	AA	AG	AA	GG	AC
6. _4306_1	CG	___	TT	___	___	___	___	___	CC	TT	CT	___	___	AC
7. _4306_8	CG	___	TT	___	___	___	___	___	CC	TT	CT	___	___	AC
8. _4306_4_>_FP	CG	___	TT	___	___	___	___	___	CC	TT	CT	___	___	AC
9. _4306_5_>_FP	CG	___	TT	___	___	___	___	___	CC	TT	CT	___	___	AC
10. _RUQ_828	___	___	___	___	___	TT	CC	___	CC	TT	CT	___	GG	AC
11. _RUQ_828	CG	___	TT	___	___	___	___	___	CC	TT	CT	___	___	AC
12. _6B_A41_T8	GG	___	TT	___	___	___	___	___	AC	GT	CT	___	___	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-04-042-3-06	CC	AG	GG	CT	AA	AG	GG	AT	CC	GG	GG	AT	CC	AG
2. _GC-04-042-3-06	CC	AG	GG	CT	AA	AG	GG	AT	CC	GG	GG	AT	CC	AG
3. _GC-04-042-3-06	CC	AG	___	CT	AA	AG	GG	AT	CC	GG	GG	AT	CC	AG
4. _GC-04-042-3-06	CC	AG	GG	CT	AA	AG	GG	AT	CC	GG	GG	AT	CC	AG
5. _GC-04-42-3-6	GG	AG	GG	AG	TT	AG	GG	AT	GG	GG	GG	AT	GG	___
6. _4306_1	CC	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
7. _4306_8	CC	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
8. _4306_4_>_FP	CC	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
9. _4306_5_>_FP	CC	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
10. _RUQ_828	CC	AG	___	CT	___	AG	GG	AT	___	___	___	___	CC	AG
11. _RUQ_828	CC	AG	___	CT	___	___	___	AT	___	___	AG	___	___	AG
12. _6B_A41_T8	___	___	___	CT	___	___	___	AA	___	___	GG	___	___	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-04-042-3-06	___	AA	AC	CC	AG	GT	GG	GG	AC	CT	AG	CC	AA	AA
2. _GC-04-042-3-06	___	AA	AC	CC	AG	GT	GG	GG	AC	CT	AG	CC	AA	AA
3. _GC-04-042-3-06	___	AA	AC	CC	AG	GT	GG	GG	AC	CT	AG	CC	AA	AA
4. _GC-04-042-3-06	___	AA	AC	CC	AG	GT	GG	GG	AC	CT	AG	CC	AA	AA
5. _GC-04-42-3-6	GG	AA	AC	___	AG	AC	GG	CG	AC	AG	___	GG	___	AA
6. _4306_1	___	___	AC	CC	___	GT	___	GG	AC	___	___	CC	AA	___
7. _4306_8	___	___	AC	CC	___	GT	___	GG	AC	___	___	CC	AA	___
8. _4306_4_>_FP	___	___	AC	CC	___	GT	___	GG	AC	___	___	CC	AA	___
9. _4306_5_>_FP	___	___	AC	CC	___	GT	___	GG	AC	___	___	CC	AA	___
10. _RUQ_828	___	___	AC	CC	___	GT	___	CG	AC	CT	___	CC	___	___
11. _RUQ_828	___	___	AC	CC	___	GT	___	GG	AC	___	___	CC	AA	___
12. _6B_A41_T8	___	___	CC	CT	___	GG	___	GG	AA	___	___	CC	AA	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-04-042-3-06	AA	TT	CC	GT	GG	TT	GT	TT	AC	CG	AA	CC	CC	TT
2. _GC-04-042-3-06	AA	TT	CC	GT	GG	TT	GT	TT	AC	CG	AA	CC	CC	TT
3. _GC-04-042-3-06	AA	TT	CC	GT	GG	TT	GT	TT	AC	CG	AA	CC	CC	TT
4. _GC-04-042-3-06	AA	TT	CC	GT	GG	TT	GT	TT	AC	CG	AA	CC	CC	TT
5. _GC-04-42-3-6	AA	___	___	AC	GG	AA	AC	AA	AC	CG	AG	GG	___	AA
6. _4306_1	___	___	___	GT	___	___	___	___	___	___	___	CC	___	TT
7. _4306_8	___	___	___	GT	___	___	___	___	___	___	___	CC	___	TT
8. _4306_4_>_FP	___	___	___	GT	___	___	___	___	___	___	___	CC	___	TT
9. _4306_5_>_FP	___	___	___	GT	___	___	___	___	___	___	___	CC	___	TT
10. _RUQ_828	___	___	TT	GT	GG	___	___	TT	AC	___	___	CC	CC	TT
11. _RUQ_828	___	___	___	GT	___	___	___	___	___	___	___	CC	___	CT
12. _6B_A41_T8	___	___	___	GG	___	___	___	___	___	___	___	CC	___	TT

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-04-042-3-06	CC	GG	CC	GG	CC	AT	TT	AA	CC	TT	CG	CC	___	GG
2. _GC-04-042-3-06	CC	GG	CC	GG	CC	AT	TT	AA	CC	TT	CG	CC	GG	GG
3. _GC-04-042-3-06	CC	GG	CC	GG	CC	AT	TT	AA	CC	TT	CG	CC	GG	GG
4. _GC-04-042-3-06	CC	GG	CC	GG	CC	AT	TT	AA	CC	TT	CG	CC	GG	GG
5. _GC-04-42-3-6	GG	GG	GG	GG	GG	AT	AA	AA	___	AA	___	GG	GG	CC
6. _4306_1	___	___	CC	GG	___	AT	TT	AA	___	___	___	CC	___	___
7. _4306_8	___	___	CC	GG	___	AT	TT	AA	___	___	___	CC	GG	___
8. _4306_4_>_FP	___	___	CC	GG	___	AT	TT	AA	___	___	___	CC	GG	___
9. _4306_5_>_FP	___	___	CC	GG	___	AT	TT	AA	___	___	___	CC	GG	___
10. _RUQ_828	___	-	___	___	___	___	___	AA	CC	___	___	CC	___	GG
11. _RUQ_828	___	___	CC	GG	___	AT	TT	AA	___	___	___	CC	GG	___
12. _6B_A41_T8	___	___	CC	___	___	AA	TT	AA	___	___	___	CC	GG	___

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-04-042-3-06	AA	CC	GG	TT	CC	TT	CC	CC	GG	CC	TT	TT	TT	CC
2. _GC-04-042-3-06	AA	CC	GG	TT	CC	TT	CC	___	GG	CC	TT	TT	TT	CC
3. _GC-04-042-3-06	AA	CC	GG	TT	CC	TT	CC	CC	GG	CC	TT	TT	TT	CC
4. _GC-04-042-3-06	AA	CC	GG	TT	CC	TT	CC	CC	GG	CC	TT	TT	TT	CC
5. _GC-04-42-3-6	AA	GG	GG	___	___	AA	GG	___	CC	___	AA	AA	AG	CC
6. _4306_1	AA	___	___	___	CC	___	___	CC	___	___	TT	TT	___	CC
7. _4306_8	AA	___	___	___	CC	___	___	CC	___	___	TT	TT	___	CC
8. _4306_4_>_FP	AA	___	___	___	CC	___	___	___	___	___	TT	TT	___	CC
9. _4306_5_>_FP	AA	___	___	___	CC	___	___	CC	___	___	TT	TT	___	CC
10. _RUQ_828	___	___	GG	TT	___	___	___	___	___	___	TT	___	CT	___
11. _RUQ_828	AA	___	___	___	CC	___	___	CC	___	___	TT	TT	___	CC
12. _6B_A41_T8	AA	___	___	___	___	___	___	CC	___	___	GG	TT	___	CC

	85	86	87	88	89	90	91	92	93	94	95	96
1. _GC-04-042-3-06	GG	CT	CC	TT	GG	AG	CC	AC	AA	AC	AG	AC	X_X	X_X
2. _GC-04-042-3-06	GG	CT	CC	TT	GG	AG	CC	AC	AA	AC	AG	AC	X_X	X_X
3. _GC-04-042-3-06	GG	CT	CC	TT	GG	AG	CC	AC	AA	AC	AG	AC	X_X	X_X
4. _GC-04-042-3-06	GG	CT	CC	TT	GG	AG	CC	AC	AA	AC	AG	AC	X_X	X_X
5. _GC-04-42-3-6	GG	AG	GG	AA	CC	AG	GG	AC	___	AC	AG	AC	X_X	X_X
6. _4306_1	___	CT	___	TT	GG	AG	CC	___	___	___	___	___	X_X	X_X
7. _4306_8	___	CT	___	TT	GG	AG	CC	___	___	___	___	___	X_X	X_X
8. _4306_4_>_FP	___	CT	___	TT	GG	AG	CC	___	___	___	___	___	X_X	X_X
9. _4306_5_>_FP	___	CT	___	TT	GG	AG	CC	___	___	___	___	___	X_X	X_X
10. _RUQ_828	___	___	CC	TT	GG	AG	___	___	___	___	___	___	X_X	X_X
11. _RUQ_828	___	CT	___	TT	GG	AG	CC	___	___	___	___	___	X_X	X_X
12. _6B_A41_T8	___	___	___	TT	CG	AG	___	___	___	___	___	___	X_X	X_X

Mars Center for Cocoa Science Brazil

1._IMC_2 GC-04-042-3-06

Location: Tree: 1

Notes: 1

2._IMC_2 GC-04-042-3-06

Location: Tree: 4

Notes: 4 > FP4

3._IMC_2 GC-04-042-3-06

Location: Tree: 5

Notes: 5 > FP1

4._IMC_2 GC-04-042-3-06

Location: Tree: 8

Notes: 8

5._IMC_2 GC-04-42-3-6

Location: Field: 4, Block: 3, Rep: 6, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

6._IMC_2

Location: 4306 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_2

Location: 4306 8

Dapeng Zhang, 2016

8._IMC_2

Location: 4306 4 > FP

Dapeng Zhang, 2016

9._IMC_2

Location: 4306 5 > FP

Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

10._IMC_2 RUQ 828

Dapeng Zhang, 2014

11._IMC_2 RUQ 828

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

12._IMC_2

Location: 6B A41 T8

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP701	45	TcSNP702
46	TcSNP723	47	TcSNP731	48	TcSNP751	49	TcSNP776	50	TcSNP799
51	TcSNP823	52	TcSNP836	53	TcSNP860	54	TcSNP872	55	TcSNP878
56	TcSNP891	57	TcSNP894	58	TcSNP899	59	TcSNP917	60	TcSNP929
61	TcSNP944	62	TcSNP953	63	TcSNP994	64	TcSNP998	65	TcSNP999
66	TcSNP1034	67	TcSNP1041	68	TcSNP1060	69	TcSNP1062	70	TcSNP1063
71	TcSNP1075	72	TcSNP1096	73	TcSNP1111	74	TcSNP1126	75	TcSNP1144
76	TcSNP1149	77	TcSNP1156	78	TcSNP1165	79	TcSNP1175	80	TcSNP1242
81	TcSNP1253	82	TcSNP1270	83	TcSNP1309	84	TcSNP1350	85	TcSNP1383
86	TcSNP1414	87	TcSNP1439	88	TcSNP1442	89	TcSNP1458	90	TcSNP1484
91	TcSNP1520	92	Tcm001s00947643	93	Tcm002s20575712	94	Tcm003s01336581	95	Tcm003s07402719
96	Tcm006s26664133