SNP Profiles of "C SUL 7" View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-08-261-8-29	CG	GT	AT	AG	CC	CT	CC	CT	AC	GG	TT	AT	AG	___
2. _GC-08-261-8-29	CG	GT	AT	AG	CC	CT	CC	CT	AC	GG	TT	AT	AG	AC
3. _GC-08-261-8-29	CG	GT	AT	AG	CC	CT	CC	CT	AC	GG	TT	AT	AG	AC
4. _GC-08-261-8-29	CG	GT	AT	AG	CC	CT	CC	CT	AC	GG	TT	AT	AG	AC
5. _GC-08-261-8-29	CG	GT	AT	AG	CC	CT	CC	CT	AC	GG	TT	AT	AG	AC
6. _NA	GG	GG	AA	AG	CC	TT	CC	TT	AC	GG	TT	TT	GG	CC
7. _NA	GG	GG	AA	AG	CC	TT	CC	TT	AC	GG	TT	TT	GG	CC
8. _NA	GG	GG	AA	AG	CC	TT	CC	TT	AC	GG	TT	TT	GG	CC
9. _NA	GG	GG	AA	AG	CC	TT	CC	TT	AC	GG	TT	TT	GG	CC
10. _NA	GG	GG	AA	AG	CC	TT	CC	TT	AC	GG	TT	TT	GG	CC
11. _8129_1	GG	___	AA	___	___	___	___	___	AC	GG	TT	___	___	CC
12. _8129_3	GG	___	AA	___	___	___	___	___	AC	GG	TT	___	___	CC
13. _8129_5	GG	___	AA	___	___	___	___	___	AC	GG	TT	___	___	CC
14. _8129_6	GG	___	AA	___	___	___	___	___	AC	GG	TT	___	___	CC
15. _8129_7	GG	___	AA	___	___	___	___	___	AC	GG	TT	___	___	CC
16. _8829_2	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	___
17. _8829_3	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
18. _8829_4	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
19. _8829_5	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
20. _8829_7	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
21. _Cabiria	CG	___	AT	___	___	___	___	___	CC	GT	CT	___	___	CC
22. _P95_583	GG	___	AA	___	___	___	___	___	AC	GG	TT	___	___	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-08-261-8-29	CG	AA	GG	CT	AA	AA	AG	AA	CC	AA	GG	AT	CG	GG
2. _GC-08-261-8-29	CG	AA	GG	CT	AA	AA	AG	AA	CC	AA	GG	AT	CG	GG
3. _GC-08-261-8-29	CG	AA	GG	CT	AA	AA	AG	AA	CC	AA	GG	AT	CG	GG
4. _GC-08-261-8-29	CG	AA	GG	CT	AA	AA	AG	AA	CC	AA	GG	AT	CG	GG
5. _GC-08-261-8-29	CG	AA	GG	CT	AA	AA	AG	AA	CC	AA	GG	AT	CG	GG
6. _NA	CG	AA	GG	CT	AT	GG	GG	AA	CC	AA	GG	AA	GG	GG
7. _NA	CG	AA	GG	CT	AT	GG	GG	AA	CC	AA	GG	AA	GG	GG
8. _NA	CG	AA	GG	CT	AT	GG	GG	AA	CC	AA	GG	AA	GG	GG
9. _NA	CG	AA	GG	CT	AT	GG	GG	AA	CC	AA	GG	AA	GG	GG
10. _NA	CG	AA	GG	CT	AT	GG	GG	AA	CC	AA	GG	AA	GG	GG
11. _8129_1	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
12. _8129_3	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
13. _8129_5	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
14. _8129_6	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
15. _8129_7	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
16. _8829_2	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
17. _8829_3	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
18. _8829_4	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
19. _8829_5	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
20. _8829_7	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG
21. _Cabiria	CG	AA	___	CC	___	___	___	AT	___	___	GG	___	___	AG
22. _P95_583	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-08-261-8-29	AC	AC	CT	AG	GG	AG	CC	AC	___	AG	CT	AG	AG	AG
2. _GC-08-261-8-29	AC	AC	CT	AG	GG	AG	CC	AC	CC	AG	CT	AG	AG	AG
3. _GC-08-261-8-29	AC	AC	CT	AG	GG	AG	CC	AC	CC	AG	CT	AG	AG	AG
4. _GC-08-261-8-29	AC	AC	CT	AG	GG	AG	CC	AC	CC	AG	CT	AG	AG	AG
5. _GC-08-261-8-29	AC	AC	CT	AG	GG	AG	CC	AC	CC	AG	CT	AG	AG	AG
6. _NA	AA	AC	CC	AA	GG	GG	CC	CC	CC	AA	CC	AA	AA	AA
7. _NA	AA	AC	CC	AA	GG	GG	CC	CC	CC	AA	CC	AA	AA	AA
8. _NA	AA	AC	CC	AA	GG	GG	CC	CC	CC	AA	CC	AA	AA	AA
9. _NA	AA	AC	CC	AA	GG	GG	CC	CC	CC	AA	CC	AA	AA	AA
10. _NA	AA	AC	CC	AA	GG	GG	CC	CC	CC	AA	CC	AA	AA	AA
11. _8129_1	___	AC	CC	___	GG	___	CC	CC	___	___	CC	AA	___	___
12. _8129_3	___	AC	CC	___	GG	___	CC	CC	___	___	CC	AA	___	___
13. _8129_5	___	AC	CC	___	GG	___	CC	CC	___	___	CC	AA	___	___
14. _8129_6	___	AC	CC	___	GG	___	CC	CC	___	___	CC	AA	___	___
15. _8129_7	___	AC	CC	___	GG	___	CC	CC	___	___	CC	AA	___	___
16. _8829_2	___	AC	CT	___	GG	___	CC	AC	___	___	CT	AG	___	___
17. _8829_3	___	AC	CT	___	GG	___	CC	AC	___	___	CT	AG	___	___
18. _8829_4	___	AC	CT	___	GG	___	CC	AC	___	___	CT	AG	___	___
19. _8829_5	___	AC	CT	___	GG	___	CC	AC	___	___	CT	AG	___	___
20. _8829_7	___	AC	CT	___	GG	___	CC	AC	___	___	CT	AG	___	___
21. _Cabiria	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AG	___	___
22. _P95_583	___	AC	CC	___	GG	___	CC	CC	___	___	CC	AG	___	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-08-261-8-29	CT	TT	GG	AA	TT	GG	GT	CC	CG	AA	CG	CG	CT	CG
2. _GC-08-261-8-29	CT	TT	GG	AA	TT	GG	GT	CC	CG	AA	CG	CG	CT	CG
3. _GC-08-261-8-29	CT	TT	GG	AA	TT	GG	GT	CC	CG	AA	CG	CG	CT	CG
4. _GC-08-261-8-29	CT	TT	GG	AA	TT	GG	GT	CC	CG	AA	CG	CG	CT	CG
5. _GC-08-261-8-29	CT	TT	GG	AA	TT	GG	GT	CC	CG	AA	CG	CG	CT	CG
6. _NA	CC	CT	GT	AA	TT	GG	TT	AA	GG	AA	CG	CG	TT	CC
7. _NA	CC	CT	GT	AA	TT	GG	TT	AA	GG	AA	CG	CG	TT	CC
8. _NA	CC	CT	GT	AA	TT	GG	TT	AA	GG	AA	CG	CG	TT	CC
9. _NA	CC	CT	GT	AA	TT	GG	TT	AA	GG	AA	CG	CG	TT	CC
10. _NA	CC	CT	GT	AA	TT	GG	TT	AA	GG	AA	CG	CG	TT	CC
11. _8129_1	___	___	GT	___	___	___	___	___	___	___	CG	___	TT	___
12. _8129_3	___	___	GT	___	___	___	___	___	___	___	CG	___	TT	___
13. _8129_5	___	___	GT	___	___	___	___	___	___	___	CG	___	TT	___
14. _8129_6	___	___	GT	___	___	___	___	___	___	___	CG	___	TT	___
15. _8129_7	___	___	GT	___	___	___	___	___	___	___	CG	___	TT	___
16. _8829_2	___	___	GG	___	___	___	___	___	___	___	CG	___	CT	___
17. _8829_3	___	___	GG	___	___	___	___	___	___	___	CG	___	CT	___
18. _8829_4	___	___	GG	___	___	___	___	___	___	___	CG	___	CT	___
19. _8829_5	___	___	GG	___	___	___	___	___	___	___	CG	___	CT	___
20. _8829_7	___	___	GG	___	___	___	___	___	___	___	CG	___	CT	___
21. _Cabiria	___	___	GG	___	___	___	___	___	___	___	GG	___	CT	___
22. _P95_583	___	___	GT	___	___	___	___	___	___	___	CG	___	TT	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-08-261-8-29	AG	CT	CG	CT	AT	CC	AA	CC	TT	CG	CT	AG	GT	AA
2. _GC-08-261-8-29	AG	CT	CG	CT	AT	CC	AA	CC	TT	CG	CT	AG	GT	AA
3. _GC-08-261-8-29	AG	CT	CG	CT	AT	CC	AA	CC	TT	CG	CT	AG	GT	AA
4. _GC-08-261-8-29	AG	CT	CG	CT	AT	CC	AA	CC	TT	CG	CT	AG	GT	AA
5. _GC-08-261-8-29	AG	CT	CG	CT	AT	CC	AA	CC	TT	CG	CT	AG	GT	AA
6. _NA	GG	CT	GG	CC	AT	CC	AA	CC	TT	CC	CC	GG	GG	AA
7. _NA	GG	___	GG	CC	AT	___	AA	CC	TT	CC	CC	GG	GG	AA
8. _NA	GG	CT	GG	CC	AT	CC	AA	CC	TT	CC	CC	GG	GG	AA
9. _NA	GG	CT	GG	CC	AT	CC	AA	CC	TT	CC	CC	GG	GG	AA
10. _NA	GG	CT	GG	CC	AT	CC	AA	CC	TT	CC	CC	GG	GG	AA
11. _8129_1	___	CT	GG	___	AT	CC	AA	___	___	___	CC	GG	___	AA
12. _8129_3	___	___	GG	___	AT	___	AA	___	___	___	CC	GG	___	AA
13. _8129_5	___	CT	GG	___	AT	CC	AA	___	___	___	CC	GG	___	AA
14. _8129_6	___	CT	GG	___	AT	CC	AA	___	___	___	CC	GG	___	AA
15. _8129_7	___	CT	GG	___	AT	CC	AA	___	___	___	CC	GG	___	AA
16. _8829_2	___	CT	CG	___	AT	CC	AA	___	___	___	CT	AG	___	AA
17. _8829_3	___	CT	CG	___	AT	CC	AA	___	___	___	CT	AG	___	AA
18. _8829_4	___	CT	CG	___	AT	CC	AA	___	___	___	CT	AG	___	AA
19. _8829_5	___	CT	CG	___	AT	CC	AA	___	___	___	CT	AG	___	AA
20. _8829_7	___	CT	CG	___	AT	CC	AA	___	___	___	CT	AG	___	AA
21. _Cabiria	___	CT	GG	___	AT	TT	AG	___	___	___	CC	AG	___	AT
22. _P95_583	___	CT	GG	___	AT	CC	AA	___	___	___	CC	GG	___	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-08-261-8-29	CT	GG	AT	CC	CT	CT	CT	GT	AC	GG	CC	___	___	AG
2. _GC-08-261-8-29	CT	GG	AT	CC	CT	CT	CT	GT	AC	GG	CC	___	___	AG
3. _GC-08-261-8-29	CT	GG	AT	CC	CT	CT	CT	GT	AC	GG	CC	___	___	AG
4. _GC-08-261-8-29	CT	GG	AT	CC	CT	CT	CT	GT	AC	GG	CC	___	___	AG
5. _GC-08-261-8-29	CT	GG	AT	CC	CT	CT	CT	GT	AC	GG	CC	___	___	AG
6. _NA	TT	AG	TT	CC	TT	CC	CT	TT	AC	GG	TT	TT	AC	GG
7. _NA	TT	AG	TT	CC	TT	CC	CT	TT	AC	GG	TT	TT	AC	GG
8. _NA	TT	AG	TT	CC	TT	CC	CT	TT	AC	GG	TT	TT	AC	GG
9. _NA	TT	AG	TT	CC	TT	CC	CT	TT	AC	GG	TT	TT	AC	GG
10. _NA	TT	AG	TT	CC	TT	CC	CT	TT	AC	GG	TT	TT	AC	GG
11. _8129_1	___	___	___	CC	___	___	CT	___	___	GG	TT	___	AC	___
12. _8129_3	___	___	___	CC	___	___	CT	___	___	GG	TT	___	AC	___
13. _8129_5	___	___	___	CC	___	___	CT	___	___	GG	TT	___	AC	___
14. _8129_6	___	___	___	CC	___	___	CT	___	___	GG	TT	___	AC	___
15. _8129_7	___	___	___	CC	___	___	CT	___	___	GG	TT	___	AC	___
16. _8829_2	___	___	___	CC	___	___	CT	___	___	GG	CC	___	___	___
17. _8829_3	___	___	___	CC	___	___	CT	___	___	GG	CC	___	___	___
18. _8829_4	___	___	___	CC	___	___	CT	___	___	GG	CC	___	___	___
19. _8829_5	___	___	___	CC	___	___	CT	___	___	GG	CC	___	___	___
20. _8829_7	___	___	___	CC	___	___	CT	___	___	GG	CC	___	___	___
21. _Cabiria	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC	___
22. _P95_583	___	___	___	CC	___	___	CT	___	___	GG	TT	___	AC	___

	85	86	87	88	89	90	91	92	93	94	95
1. _GC-08-261-8-29	CT	CT	TT	CG	GG	CC	CC	AG	AC	GG	AC	X_X	X_X	X_X
2. _GC-08-261-8-29	CT	CT	TT	CG	GG	CC	CC	AG	AC	GG	AC	X_X	X_X	X_X
3. _GC-08-261-8-29	CT	CT	TT	CG	GG	CC	CC	AG	AC	GG	AC	X_X	X_X	X_X
4. _GC-08-261-8-29	CT	CT	TT	CG	GG	CC	CC	AG	AC	GG	AC	X_X	X_X	X_X
5. _GC-08-261-8-29	CT	CT	TT	CG	GG	CC	CC	AG	AC	GG	AC	X_X	X_X	X_X
6. _NA	CC	CC	CT	CC	AA	CC	CC	GG	CC	GG	CC	X_X	X_X	X_X
7. _NA	CC	CC	CT	CC	AA	CC	CC	GG	CC	GG	CC	X_X	X_X	X_X
8. _NA	CC	CC	CT	CC	AA	CC	CC	GG	CC	GG	CC	X_X	X_X	X_X
9. _NA	CC	CC	CT	CC	AA	CC	CC	GG	CC	GG	CC	X_X	X_X	X_X
10. _NA	CC	CC	CT	CC	AA	CC	CC	GG	CC	GG	CC	X_X	X_X	X_X
11. _8129_1	CC	___	CT	CC	AA	CC	___	___	___	___	___	X_X	X_X	X_X
12. _8129_3	CC	___	CT	CC	AA	CC	___	___	___	___	___	X_X	X_X	X_X
13. _8129_5	CC	___	CT	CC	AA	CC	___	___	___	___	___	X_X	X_X	X_X
14. _8129_6	CC	___	CT	CC	AA	CC	___	___	___	___	___	X_X	X_X	X_X
15. _8129_7	CC	___	CT	CC	AA	CC	___	___	___	___	___	X_X	X_X	X_X
16. _8829_2	CT	___	TT	CG	GG	CC	___	___	___	___	___	X_X	X_X	X_X
17. _8829_3	CT	___	TT	CG	GG	CC	___	___	___	___	___	X_X	X_X	X_X
18. _8829_4	CT	___	TT	CG	GG	CC	___	___	___	___	___	X_X	X_X	X_X
19. _8829_5	CT	___	TT	CG	GG	CC	___	___	___	___	___	X_X	X_X	X_X
20. _8829_7	CT	___	TT	CG	GG	CC	___	___	___	___	___	X_X	X_X	X_X
21. _Cabiria	CT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X	X_X
22. _P95_583	CC	___	CT	CC	AA	CC	___	___	___	___	___	X_X	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._C_SUL_7 GC-08-261-8-29

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Location: Tree: 2

Notes: 2

Mars, 2018

2._C_SUL_7 GC-08-261-8-29

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Location: Tree: 3

Notes: 3

Mars, 2018

3._C_SUL_7 GC-08-261-8-29

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Location: Tree: 4

Notes: 4

Mars, 2018

4._C_SUL_7 GC-08-261-8-29

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Location: Tree: 5

Notes: 5

Mars, 2018

5._C_SUL_7 GC-08-261-8-29

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Location: Tree: 7

Notes: 7

Mars, 2018

6._C_SUL_7 NA

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Location: Tree: 1

Notes: 1

Mars, 2018

7._C_SUL_7 NA

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Location: Tree: 3

Notes: 3

Mars, 2018

8._C_SUL_7 NA

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Location: Tree: 5

Notes: 5

Mars, 2018

9._C_SUL_7 NA

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Location: Tree: 6

Notes: 6

Mars, 2018

10._C_SUL_7 NA

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Location: Tree: 7

Notes: 7

Mars, 2018

11._C_SUL_7

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Location: 8129 1

Dapeng Zhang, 2016

Population Assignment:

12._C_SUL_7

Location: 8129 3

13._C_SUL_7

Location: 8129 5

14._C_SUL_7

Location: 8129 6

15._C_SUL_7

Location: 8129 7

16._C_SUL_7

Location: 8829 2

Population Assignment:

17._C_SUL_7

Location: 8829 3

18._C_SUL_7

Location: 8829 4

19._C_SUL_7

Location: 8829 5

20._C_SUL_7

Location: 8829 7

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

21._C_SUL_7

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Location: Cabiria

Dapeng Zhang, 2016

Cocoa Research Institute of Ghana (CRIG) Ghana

22._C_SUL_7

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Location: P95 583

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP521	30	TcSNP529
31	TcSNP534	32	TcSNP547	33	TcSNP560	34	TcSNP561	35	TcSNP577
36	TcSNP591	37	TcSNP602	38	TcSNP606	39	TcSNP619	40	TcSNP645
41	TcSNP653	42	TcSNP689	43	TcSNP701	44	TcSNP702	45	TcSNP723
46	TcSNP731	47	TcSNP751	48	TcSNP776	49	TcSNP799	50	TcSNP823
51	TcSNP836	52	TcSNP860	53	TcSNP872	54	TcSNP878	55	TcSNP891
56	TcSNP894	57	TcSNP899	58	TcSNP917	59	TcSNP929	60	TcSNP944
61	TcSNP953	62	TcSNP994	63	TcSNP998	64	TcSNP999	65	TcSNP1034
66	TcSNP1041	67	TcSNP1060	68	TcSNP1062	69	TcSNP1063	70	TcSNP1075
71	TcSNP1096	72	TcSNP1111	73	TcSNP1126	74	TcSNP1144	75	TcSNP1149
76	TcSNP1156	77	TcSNP1165	78	TcSNP1175	79	TcSNP1242	80	TcSNP1253
81	TcSNP1270	82	TcSNP1309	83	TcSNP1350	84	TcSNP1383	85	TcSNP1414
86	TcSNP1439	87	TcSNP1442	88	TcSNP1458	89	TcSNP1484	90	TcSNP1520
91	Tcm001s00947643	92	Tcm002s20575712	93	Tcm003s01336581	94	Tcm003s07402719	95	Tcm006s26664133